Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03916 ATGGGTGTTGTTGGTGAATGGCGTGATTGGCAATCCCTTCTTCAATCCATTATATTCGGTCTAATTTTCTCTTACCTTCTCGCTAAACTCATTTCAATCGTAGTTTCATTCAACAACGAAAATCTCACAATCACACGAAACACCACAACAAACAAAATTCCCGATCATCATGATTCCAAACAAGACGACGTCGTTTCGGATCCAGGACATCACCGTCTTGAAGCCGAAGCTGAATCTGTTATGGCTGAGCAAGGTAGTGTCAGAAACGAAAGCGTTGACGGTGGTGATGATGATTACGATGATGATTGGGAAGGTGTAGAAAGTACTGAATTGGATGAAGCTTTTAGCGCTGCTACGGCTTTTGTTGCTGCTGCCGCTGCTGATCGGTTGTCGCAGAAAGTTTCTAATGATGTTCAGCTTCAGCTTTATGGTTTGTATAAGATTGCTACTGAAGGTCCTTGTAGTACTCCTCAACCTTCTCCTCTCAAAATGACAGCTCGTGCTAAATGGCAAGCTTGGCAGAAATTGGGTGCGATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGTCAGAGCTATATCCTACTTGGCTTGACGGTGCACCTTTGAGGAGCAAAACCGGTGACGGTGGTGGTTCTAGTTCAGACGCTCGCGGACCAATGGGGCCAGTATTCAGCTCTTTTGTTTATGAAGAGGAATGCGGCAATGACTCGAAAATGGACGCCATTCATGGATTTGCAAGAGAGGGAGATATGGCTAATCTACTCAAGTGTATTGAAAATGGTGTTTCAGTGAATTTGAAGGATAGTGAGGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGCTGCTGGTCGGTAGGAATGCTGATGTAAATGCCAAGGATAATGATGGACAAACTCCGCTGCACTACGCTGTAACGTGCGAGAGAGAAGCCATAGCTGAATACTTGGTGAAACATAGTGCGGACATCCATTCAGAAGATAATGATGGCAGTTCATCGTGTGACATCTGTAGTTCCAGGTGGCCATTTATGCAGCATGAGGGAGAAGTAAAATGA 1086 0.4521 MGVVGEWRDWQSLLQSIIFGLIFSYLLAKLISIVVSFNNENLTITRNTTTNKIPDHHDSKQDDVVSDPGHHRLEAEAESVMAEQGSVRNESVDGGDDDYDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGSSSDARGPMGPVFSSFVYEEECGNDSKMDAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGRNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSCDICSSRWPFMQHEGEVK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03916 361 MobiDBLite consensus disorder prediction 77 98 - -
Trre5g03916 361 ProSiteProfiles Ankyrin repeat profile. 273 305 IPR002110 GO:0005515
Trre5g03916 361 Pfam Acyl CoA binding protein 112 192 IPR000582 GO:0000062
Trre5g03916 361 Gene3D - 232 351 IPR036770 -
Trre5g03916 361 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Trre5g03916 361 PRINTS Acyl-coA-binding protein signature 157 172 IPR000582 GO:0000062
Trre5g03916 361 PRINTS Acyl-coA-binding protein signature 134 152 IPR000582 GO:0000062
Trre5g03916 361 PRINTS Acyl-coA-binding protein signature 178 195 IPR000582 GO:0000062
Trre5g03916 361 SUPERFAMILY Acyl-CoA binding protein 110 200 IPR035984 GO:0000062
Trre5g03916 361 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 111 201 IPR000582 GO:0000062
Trre5g03916 361 SUPERFAMILY Ankyrin repeat 237 348 IPR036770 -
Trre5g03916 361 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 7 355 - -
Trre5g03916 361 PRINTS Ankyrin repeat signature 274 289 IPR002110 GO:0005515
Trre5g03916 361 PRINTS Ankyrin repeat signature 322 336 IPR002110 GO:0005515
Trre5g03916 361 ProSiteProfiles Ankyrin repeat region circular profile. 306 338 - -
Trre5g03916 361 ProSiteProfiles Ankyrin repeat region circular profile. 273 305 - -
Trre5g03916 361 SMART ANK_2a 240 269 IPR002110 GO:0005515
Trre5g03916 361 SMART ANK_2a 273 302 IPR002110 GO:0005515
Trre5g03916 361 SMART ANK_2a 306 335 IPR002110 GO:0005515
Trre5g03916 361 Pfam Ankyrin repeats (3 copies) 246 337 IPR002110 GO:0005515
Trre5g03916 361 Gene3D - 105 216 IPR014352 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03916 Trre-Chr5 40301765 40306185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03916 9 357 Acyl Lipid Metabolism Gene Families AT5G53470 63.897 2.14e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03916 - - psat:127081845 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03916 5 40301765 40306185 Trre5g03916 5 40301765 40306185 ECH