Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1323 ATGTCGAAGGCGGTGGTTTCTGGCCTTCTTACCATCGCCTTCGTCTTCTTTGTTGTTTTCACCCTCGCTACCCAAAAGGGTCACAACAATTTTTACCTAGCTCGTCGCCTAGGCCACAATCGAGTAGCATTTAACCCTTTAGTTGAGAAAATTGAAGAAATGGCTAGAGAAACTTCTGACCATCATTTTCTTTTCAATTTATCAAATATTTTTCTAAATGATGTTGAGGACAAATACGAATTTGTTAGCCAAGTGAAAAATCTAAACATAACAATGAGGCTAATGGTTTTGTTTCCTTTGCTAGATGTAGAACCACGTGATGGGTTCATTAGCCTAAAAGAACTCGAGCATTGGAATATGCAACAAGCGATTCATCGATTAAGTTACAGGACACATAAAGAATTGGTATTGTTTGACCAAAATGAAGATGGGGCTATCACTTTTAGGGAATACCTCCCTAAAATCTCTTATCAAAGTATAGAAAACAATGGCATGACACATGGTGAAGCTGGATGGTGGGAGGATCAATTCAAGAATGCCGATTTTGACAACAACGGAGCTCTCGGCTTTGAAGAATTCAAAGAGTAA 588 0.3878 MSKAVVSGLLTIAFVFFVVFTLATQKGHNNFYLARRLGHNRVAFNPLVEKIEEMARETSDHHFLFNLSNIFLNDVEDKYEFVSQVKNLNITMRLMVLFPLLDVEPRDGFISLKELEHWNMQQAIHRLSYRTHKELVLFDQNEDGAITFREYLPKISYQSIENNGMTHGEAGWWEDQFKNADFDNNGALGFEEFKE* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1323 195 ProSitePatterns EF-hand calcium-binding domain. 181 193 IPR018247 -
Vvi16g1323 195 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Vvi16g1323 195 ProSiteProfiles EF-hand calcium-binding domain profile. 168 195 IPR002048 GO:0005509
Vvi16g1323 195 PANTHER RETICULOCALBIN 57 194 - -
Vvi16g1323 195 SUPERFAMILY EF-hand 91 194 IPR011992 -
Vvi16g1323 195 Gene3D - 72 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1323 Vvi-Chr16 21743485 21744182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1323 1 193 EF-hand Containing Proteins AT4G27790 44.670 8.19e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1323 K23901 - vvi:100257221 386.726