Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0890 . . Adu02g02281 Aed2g0852 Aev02g0417 Ahy12g2395 Ahy2g2075 Aip02g02678 . Amo12g2825 . Apr10g1448 Arst2g02962 . . . Car07g02626 Cca01g02123 . Dod07g1791 . . . . . Gso3g0179 Lal14g0896 . Lal19g0228 . Lan1g0765 . Lapu10g01530 Lasa4g01077 . . . . Lja3g1433 Mal5g1626 . Mesa29g04094 . Mtr8g1118 Phac10g00964 . . Psa4g3472 Pste6g02378 Pumo7g01008 Rops4g01301 Seca2g01161 Spst4g01687 Ssu4g2631 . . Trre15g01358 Tsu08g01261 . Vifa4g00729 . Viun10g01667 Vivi7g04646 .
Pvu10g0891 . . . Aed2g0851 . . . . . . . Apr10g1447 . . . . . Cca01g02124 . . . . . Gma01g01488 Gso1g1231 Gso3g0178 . . . . . . . . . . . . Lja3g1438 . . . . . . . . . . Pumo7g01006 . Seca4g11118 . Ssu4g2632 . . . . . . . . . .
Pvu10g0892 . . Adu02g02284 Aed2g0850 Aev02g0415 Ahy12g2397 Ahy2g2078 Aip02g02681 . Amo12g2828 . Apr10g1446 Arst2g02965 . . . Car07g02627 Cca01g02125 . Dod07g1794 . . . Gma01g01489 Gso1g1232 Gso3g0177 Lal14g0899 . . . . . Lapu10g01532 Lasa4g01075 . . . . Lja3g1439 Mal5g1624 Mepo1g03569 Mesa29g04096 . Mtr8g1116 Phac10g00967 Phco1g00932 . Psa4g3473 Pste6g02373 Pumo7g01005 Rops4g01309 Seca4g11119 Spst4g01689 Ssu4g2633 . . Trre15g01357 Tsu08g01259 Vian9g00817 Vifa4g00728 . Viun10g01668 Vivi7g04644 .
Pvu10g0893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0894 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0896 Acco07g1068 Accr6g00932 Adu02g02307 Aed2g0829 Aev02g0390 Ahy12g2431 Ahy2g2104 Aip02g02719 Alju05g1172 Amo12g2867 . Apr10g1434 Arst2g03006 . Bisa06g1095 . Car07g02639 Cca01g02138 Dere11g0928 Dod07g1831 . Glsi07g1021 . . . Gso3g0167 Lal14g0906 . . . . . . Lasa4g01063 . Lele38g0654 . . Lja3g1450 Mal5g1611 Mepo1g03583 Mesa29g04111 Mibi04g1136 Mtr8g1099 . . Prci12g1393 . Pste6g02339 Pumo7g00993 . . Spst4g01707 Ssu4g2645 Sto1g1609 . Trre15g01337 Tsu08g01240 Vian9g00793 Vifa4g00718 Vimu9g00508 . Vivi7g04623 .
Pvu10g0897 . . . Aed2g0827 Aev02g0389 Ahy12g2432 Ahy2g2105 . . Amo12g2868 . Apr10g1433 . . . . Car07g02640 Cca01g02139 . Dod07g1833 . . Gma07g00746 . Gso7g0711 Gso3g0166 . Lal7g0153 . . . . . Lasa4g01059 . . . . . Mal5g1608 Mepo1g03584 Mesa29g04112 . Mtr8g1098 Phac10g00992 Phco1g00920 . Psa4g4522 Pste6g02337 Pumo7g00992 Rops4g01346 Seca2g01139 Spst4g01708 Ssu4g2647 . . Trre15g01336 Tsu08g01238 Vian9g00792 Vifa4g00717 Vimu9g00504 Viun10g01696 Vivi7g04621 .
Pvu10g0898 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vivi Vivi7g04621 Chr7 118016006 118018151 -
Seca Seca2g01139 Chr2 18295844 18297515 -
Aed Aed2g0851 Chr2 6529481 6530391 +
Apr Apr10g1446 Chr10 26836727 26840102 +
Mal Mal5g1624 Chr5 31733034 31735970 +
Mepo Mepo1g03569 Chr1 41535373 41538368 -
Mesa Mesa29g04096 Chr29 67171153 67173091 -
Mtr Mtr8g1116 Chr8 13615923 13618349 +
Trre Trre15g01357 Chr15 10528813 10531488 +
Aev Aev02g0415 Chr02 3071627 3073616 +
Aed Aed2g0850 Chr2 6519926 6524789 +
Pvu Pvu10g0889 Chr10 31783093 31783878 -
Pvu Pvu10g0890 Chr10 31876393 31879238 +
Adu Adu02g02281 Chr02 87751911 87755097 +
Aed Aed2g0852 Chr2 6531736 6536444 -
Aev Aev02g0417 Chr02 3092515 3094931 -
Ahy Ahy12g2395 Chr12 112159810 112163023 +
Ahy Ahy2g2075 Chr2 96066588 96069770 +
Aip Aip02g02678 Chr02 102274197 102276364 +
Amo Amo12g2825 Chr12 114596893 114597761 +
Apr Apr10g1448 Chr10 26859923 26862539 -
Arst Arst2g02962 Chr2 87213446 87216612 +
Car Car07g02626 Chr07 50404780 50405181 +
Cca Cca01g02123 Chr01 48744374 48747324 +
Dod Dod07g1791 Chr07 46861283 46864337 +
Gso Gso3g0179 Chr3 2319006 2322035 -
Lal Lal14g0896 Chr14 11362644 11365887 +
Lal Lal19g0228 Chr19 2131794 2139588 -
Lan Lan1g0765 Chr1 17862626 17865417 +
Lapu Lapu10g01530 Chr10 26437926 26440203 +
Lasa Lasa4g01077 Chr4 66971794 66972858 -
Lja Lja3g1433 Chr3 15161969 15163668 +
Mal Mal5g1626 Chr5 31743167 31746610 -
Mesa Mesa29g04094 Chr29 67157433 67159572 +
Mtr Mtr8g1118 Chr8 13627756 13629978 -
Phac Phac10g00964 Chr10 29951221 29953555 +
Psa Psa4g3472 Chr4 294803106 294804876 +
Pste Pste6g02378 Chr6 11593770 11596794 -
Pumo Pumo7g01008 Chr7 18661813 18662308 -
Rops Rops4g01301 Chr4 34444375 34446206 +
Seca Seca2g01161 Chr2 18765194 18767878 -
Spst Spst4g01687 Chr4 56600084 56610489 +
Ssu Ssu4g2631 Chr4 66905429 66907920 +
Trre Trre15g01358 Chr15 10532540 10534180 -
Tsu Tsu08g01261 Chr08 14110106 14113633 -
Vifa Vifa4g00729 Chr4 212221103 212222409 -
Viun Viun10g01667 Chr10 31588988 31591296 +
Vivi Vivi7g04646 Chr7 118261488 118263949 -
Pvu Pvu10g0891 Chr10 31923794 31925355 -
Aed Aed2g0851 Chr2 6529481 6530391 +
Apr Apr10g1447 Chr10 26851853 26852611 +
Cca Cca01g02124 Chr01 48748539 48749836 -
Gma Gma01g01488 Chr01 50129160 50130463 -
Gso Gso1g1231 Chr1 48426091 48427454 -
Gso Gso3g0178 Chr3 2314065 2315555 +
Lja Lja3g1438 Chr3 15180839 15181542 -
Pumo Pumo7g01006 Chr7 18654583 18656201 +
Seca Seca4g11118 Chr4 249561276 249562498 -
Ssu Ssu4g2632 Chr4 66918265 66919090 -
Pvu Pvu10g0892 Chr10 31980528 31982236 -
Adu Adu02g02284 Chr02 87784701 87788580 -
Aed Aed2g0850 Chr2 6519926 6524789 +
Aev Aev02g0415 Chr02 3071627 3073616 +
Ahy Ahy12g2397 Chr12 112199855 112203627 -
Ahy Ahy2g2078 Chr2 96100099 96104037 -
Aip Aip02g02681 Chr02 102309262 102313594 -
Amo Amo12g2828 Chr12 114623284 114626999 -
Apr Apr10g1446 Chr10 26836727 26840102 +
Arst Arst2g02965 Chr2 87246271 87250145 -
Car Car07g02627 Chr07 50407227 50410615 -
Cca Cca01g02125 Chr01 48769252 48771948 +
Dod Dod07g1794 Chr07 46888666 46892479 -
Gma Gma01g01489 Chr01 50144922 50153626 -
Gso Gso1g1232 Chr1 48441520 48450723 -
Gso Gso3g0177 Chr3 2289567 2294960 +
Lal Lal14g0899 Chr14 11401417 11403163 -
Lapu Lapu10g01532 Chr10 26492336 26497203 -
Lasa Lasa4g01075 Chr4 66968809 66971203 +
Lja Lja3g1439 Chr3 15183585 15186849 -
Mal Mal5g1624 Chr5 31733034 31735970 +
Mepo Mepo1g03569 Chr1 41535373 41538368 -
Mesa Mesa29g04096 Chr29 67171153 67173091 -
Mtr Mtr8g1116 Chr8 13615923 13618349 +
Phac Phac10g00967 Chr10 30082273 30085391 -
Phco Phco1g00932 Chr1 9360588 9363393 +
Psa Psa4g3473 Chr4 294804855 294808033 -
Pste Pste6g02373 Chr6 11564363 11567144 +
Pumo Pumo7g01005 Chr7 18634711 18637695 +
Rops Rops4g01309 Chr4 34545278 34548152 -
Seca Seca4g11119 Chr4 249567195 249570770 -
Spst Spst4g01689 Chr4 56644348 56647008 -
Ssu Ssu4g2633 Chr4 66945591 66956739 -
Trre Trre15g01357 Chr15 10528813 10531488 +
Tsu Tsu08g01259 Chr08 14102114 14103531 +
Vian Vian9g00817 Chr9 12011259 12012611 +
Vifa Vifa4g00728 Chr4 212204448 212220452 +
Viun Viun10g01668 Chr10 31612149 31615295 -
Vivi Vivi7g04644 Chr7 118252896 118256102 +
Pvu Pvu10g0893 Chr10 32047428 32048346 -
Pvu Pvu10g0894 Chr10 32048572 32048676 -
Pvu Pvu10g0895 Chr10 32049849 32049911 -
Pvu Pvu10g0896 Chr10 32073311 32088931 +
Acco Acco07g1068 Chr07 15449004 15478288 -
Accr Accr6g00932 Chr6 20430995 20447836 -
Adu Adu02g02307 Chr02 88157994 88165677 +
Aed Aed2g0829 Chr2 6385017 6392313 -
Aev Aev02g0390 Chr02 2868939 2876545 -
Ahy Ahy12g2431 Chr12 112715214 112722173 +
Ahy Ahy2g2104 Chr2 96362366 96370179 +
Aip Aip02g02719 Chr02 102831649 102839065 +
Alju Alju05g1172 Chr05 37507897 37551844 +
Amo Amo12g2867 Chr12 114929754 114937227 +
Apr Apr10g1434 Chr10 26683457 26696249 -
Arst Arst2g03006 Chr2 87631903 87639087 +
Bisa Bisa06g1095 Chr06 39117697 39179812 +
Car Car07g02639 Chr07 50593224 50604207 +
Cca Cca01g02138 Chr01 49029876 49056801 +
Dere Dere11g0928 Chr11 17722816 17752476 +
Dod Dod07g1831 Chr07 47638270 47641400 +
Glsi Glsi07g1021 Chr07 12175907 12201250 -
Gso Gso3g0167 Chr3 2133793 2147598 -
Lal Lal14g0906 Chr14 11484521 11499915 +
Lasa Lasa4g01063 Chr4 64884959 64908030 -
Lele Lele38g0654 Chr38 6484921 6530731 -
Lja Lja3g1450 Chr3 15295996 15325054 +
Mal Mal5g1611 Chr5 31450978 31456462 -
Mepo Mepo1g03583 Chr1 41708245 41720378 +
Mesa Mesa29g04111 Chr29 67419604 67432313 +
Mibi Mibi04g1136 Chr04 24748474 24776164 -
Mtr Mtr8g1099 Chr8 13428636 13441102 -
Prci Prci12g1393 Chr12 29567848 29593270 +
Pste Pste6g02339 Chr6 11373585 11387869 -
Pumo Pumo7g00993 Chr7 18155241 18169566 -
Spst Spst4g01707 Chr4 56976381 56991698 +
Ssu Ssu4g2645 Chr4 67360591 67375925 +
Sto Sto1g1609 Chr1 23940140 23959387 -
Trre Trre15g01337 Chr15 10352247 10364416 -
Tsu Tsu08g01240 Chr08 13835227 13847598 -
Vian Vian9g00793 Chr9 11096242 11133612 -
Vifa Vifa4g00718 Chr4 209271701 209277195 -
Vimu Vimu9g00508 Chr9 6018288 6019178 -
Vivi Vivi7g04623 Chr7 118020054 118029697 -
Pvu Pvu10g0897 Chr10 32100934 32105089 +
Aed Aed2g0827 Chr2 6380024 6382194 -
Aev Aev02g0389 Chr02 2866114 2866927 -
Ahy Ahy12g2432 Chr12 112723610 112729554 +
Ahy Ahy2g2105 Chr2 96371852 96378909 +
Amo Amo12g2868 Chr12 114939198 114946182 +
Apr Apr10g1433 Chr10 26679295 26682752 -
Car Car07g02640 Chr07 50610832 50613479 +
Cca Cca01g02139 Chr01 49063372 49066002 +
Dod Dod07g1833 Chr07 47650865 47653521 +
Gma Gma07g00746 Chr07 7872911 7892889 -
Gso Gso7g0711 Chr7 7722976 7726676 -
Gso Gso3g0166 Chr3 2129453 2132593 -
Lal Lal7g0153 Chr7 1734441 1737738 -
Lasa Lasa4g01059 Chr4 64783074 64784163 -
Mal Mal5g1608 Chr5 31430236 31431380 -
Mepo Mepo1g03584 Chr1 41723366 41726256 +
Mesa Mesa29g04112 Chr29 67435181 67437042 +
Mtr Mtr8g1098 Chr8 13422730 13426099 -
Phac Phac10g00992 Chr10 30469680 30472661 +
Phco Phco1g00920 Chr1 9159355 9160935 -
Psa Psa4g4522 Chr4 402980445 402984060 -
Pste Pste6g02337 Chr6 11355255 11360006 -
Pumo Pumo7g00992 Chr7 18150142 18154003 -
Rops Rops4g01346 Chr4 35123612 35125803 +
Seca Seca2g01139 Chr2 18295844 18297515 -
Spst Spst4g01708 Chr4 56996339 56997503 +
Ssu Ssu4g2647 Chr4 67388051 67389232 +
Trre Trre15g01336 Chr15 10346776 10347872 -
Tsu Tsu08g01238 Chr08 13809388 13815237 -
Vian Vian9g00792 Chr9 11081771 11083186 -
Vifa Vifa4g00717 Chr4 209263570 209264498 -
Vimu Vimu9g00504 Chr9 5976711 5981465 -
Viun Viun10g01696 Chr10 31961768 31965404 +
Vivi Vivi7g04621 Chr7 118016006 118018151 -
Pvu Pvu10g0898 Chr10 32102008 32102211 +