Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0167 ATGAGCGCAGAGAATGAGAGTAAGAAGACACAGTTCTGTTGCATTTCCCACGAATTCTTCCGAACAGCGTCCGCAAACCCTAACAAAATCGCAGCGATTCACGCTTCCGGCGTGGCCCACCTTTCCCGACAGTTTCACCGCGAAAATTCCACCACCCCCAACTTCGACGGCGACCTCGCCACGCTCTTGGAGAAGCGCGTCGAGTCCACGTCTCCGCCACTGTATCATGGGGACCGCTCCTTCACTTACTCTCGTGTCTCGAACGCCGTTCGTTCCCTCAGCTTCCGCCTCCGCTCCATCCTGCTTGGTGCGGATGACCCGCACTTGATCACAGCCCAATCTCGAGGTAACGATAGTGTCAACTGTGAAGAGGGAACTGTACAGGCACCTGAGTCCTTGGAAACTGTCATGCCTAGTGAAGGGGTTATGAATGAATCAAGTAGAGAGTATAGGCCAAAGATTGTGGGCATTTATATGCCTCCTTCTGTTGAATATGTTGTTGCTGTTCTTTCAGTACTGAGGTGTGGGGAAGCCTTCTTGCCTCTGGATCCGTTTTGGCCAAACGAAAGAATATTGTCTGTTGCTTATTCTTCAAATGTTGATCTCATTATAGGGTCCCAATCTTCTTTTGGGAAAAGCAACTTGGACAAGCTTGATGAATCACATTGGCTGGTAAAGTCAATTAATTGTCCTGTTTTGAATTACTCCATTGATGAAAACATTCAAGTATGTAGTGGTCCAACAGATTTAACATGGCCTTGTGCCAATGAAAAACGAAGATCATTCAGCTATCTGATGTACACATCTGGATCAACTGGAAAGCCTAAAGGAGTGTGTGGCACCGAACAAGGTCTTTCAAATCGCTTTTTATGGATGCAAGGAATGTATCCTCTGAATGGGCAGGAACTATTGTTGTTTAATTCATCAGTTAGCTTCATTGACCACCTGCAAGAATTTCTCAGTGCTATTTTGACTGCTTGTGTGTTAGTCATTCCTCCTTTCAACGAACTAAAAGAAAATATATATTCTATAATAGATTTTCTGCAGGCATATTTTGTTAATAGGCTTACAACTGTTCCATCACTAATGAGGACTATTCTTCCTGGATTGCAAACCCATGCTAACATGCTGGTTGAAAATTCACTGAAATTGCTTGTGCTTAGTGGTGAAACTTTTCCTTTGACCTTATGGGAGATGCTTTCAACTATATTACCAAAGACATCAATCTTAAATTTATATGGAAGTACTGAGGTTTCTGGTGACTGTACATATTTTGATTGCAAGAGGATGCCATTGATTTTGAAGGAAGAAAAGCTAACCAGTGTTCCAATAGGTTTACCCATAACTAACTGTGATGTGATGATGCTTCTTAATGAAAATGGTGCATCAAATGAGGGAGAACTATATGTTGGTGGCTCTTGCATCTTTAGGGATTACTATAATGAACCTAATATAATGTCTGATGCATTTGCAAAGTTGCCTCGAAGTTACGCTTGCCAAGGCCAATTATACTTTAGAACTGGTGATTTAGTCAAACAGTTGCCAAGTGGTGACTTTGTATTTCTGGGAAGAAAAGACCGCATTATAAAAATCAATGGACAGCGTATTGCCCTAGAAGAAGTTGAAGAATTACTAAGGGAACATCCGTATATAAATGATGCTGCTGTAGTTTGTCGAAATAATGAAGCAGAACTTGTGCTTCTTGAAGCTTTTATCATATTAAAGAAAAAGGAAAGATCAGGTGAATTATTAATACCTGCAATCCGAAGTTGGATGATTAACAAACTTCCATCAATTGTAATTCCCAACCGTTTCTTCTTTATGGAATCATTTCCTGTGTCTCCAAGTGGTAAAGTTAATTATGAGTTGTTGGTTGGCTCAGCACTATTGACAAAGAATGTCAAGGATAAAGTTAGTAACATCGACTGCAGCAATCTTCTGCAACTTATTAAAAAGAAAAAAGGATCATGCTCTTTGCATAACAGGCTGGATTGTTGTAGGCAAATAAACACAGACAGACAAGATAACCATATTTCTATGAATCATGCTGAAAATTCTAGTCCTCTTGAGTCAAGGATGATTTTGAAAGATAATGATCATGATTCTTTTCCTTCTAAACGCTTAAAGAGGGGTTTGATAGATGTTACATCATGGGGTGATGAATCCTTCCCGTGGTATTCCCCTTCACTATTATCATTCTCATTTAGCCGATGCAACAAGGTGTTGTATAAAGGGAAGCAGGCAGTAATTGATACAAACCAAACAACTTGGTCTGCAAATGTTCCAAGAGGCAGCAGAGGTCACATGAACAACTTTTGGAAAGTTTACCTGGAATCTTGTGTTGATGCTTCCCCAATACTTGTGTTTAAAGGCACAGACATTTATTTGTTCATTGGATCTCACTCTCATAAATTTCTCTGCATAAATGCCAGAAGTGGTTCTGTCCAGTGGGAGATCAAACTAAAAGGACGCATTGAATGTACAGCAGCAATTGTTTCTGATTTTTCCCAGGTTGTTGTTGGATGTTACATGGGAAAAATACATTTTCTTGATTTTTTGAATGGACGCATCTGTTGGATTTTCCAAACTTCTGGCGAGGTAAAAGCACAGCCAGTTGTAGACACATGCAGACAATTGATCTGGTGTGGCTCACATGATCATAACTTGTATGCTCTTGACTACAAAAAACATTGCTGTGTGTACAAGCTATCATGTGGAGGCAGTATATATGGGTCACCTGCAATTGATGAGGTTCGTGGCTTGCTTTATGTGGCCTCTACCGGTGGTCGTATAACAGCTATATCAATATCGGCTTCTCCATTTACTATATTGTGGCTACATGAATTAGAAGTCCCTGTGTTTGGTTCTCTTGCTGTCGCCCACAATGGAACTGTAATATGTTGCTTGGTAGATGGCCATGTTCTTGCATTGGACCCAAATGGATCCATTGTTTGGAAGAAAACAACTGATGGTCCAATATTTGCTGGGCCATGCATACCTTCTGTTCTTCCTCATGAGGTGCTTGTATGCTCCAGAAGCGGAGGTGTGTACTCATTCAAACTGGAGAAAGGGGACCTACTGTGGGAATACAATGTTGGAGATCCAATTACTGCATCTGCTTACGTTGACGAACACTTGCAGCTGGAGTCTGATGCTTCCCATTCTTCAGACAGGTTAGTTTGCATTTGTTCCAGTTCTGGAGGCATACACCTTCTTCGAGTGAACATGAATCACTCCGAAGATGCAAATCAACAAAGACGGGATGTGCAAGAATTTGCAAAGCTAAACTTGCCAGGGGATGTATTCTCTTCACCTTTAATGATTGGTGGCCGGATTTTTGTTGGATGTCGGGATGACTACTTGCATTGTATTGCCCTTGAAATTCCAAAGCAACATGAAAGTTAA 3405 0.4115 MSAENESKKTQFCCISHEFFRTASANPNKIAAIHASGVAHLSRQFHRENSTTPNFDGDLATLLEKRVESTSPPLYHGDRSFTYSRVSNAVRSLSFRLRSILLGADDPHLITAQSRGNDSVNCEEGTVQAPESLETVMPSEGVMNESSREYRPKIVGIYMPPSVEYVVAVLSVLRCGEAFLPLDPFWPNERILSVAYSSNVDLIIGSQSSFGKSNLDKLDESHWLVKSINCPVLNYSIDENIQVCSGPTDLTWPCANEKRRSFSYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGMYPLNGQELLLFNSSVSFIDHLQEFLSAILTACVLVIPPFNELKENIYSIIDFLQAYFVNRLTTVPSLMRTILPGLQTHANMLVENSLKLLVLSGETFPLTLWEMLSTILPKTSILNLYGSTEVSGDCTYFDCKRMPLILKEEKLTSVPIGLPITNCDVMMLLNENGASNEGELYVGGSCIFRDYYNEPNIMSDAFAKLPRSYACQGQLYFRTGDLVKQLPSGDFVFLGRKDRIIKINGQRIALEEVEELLREHPYINDAAVVCRNNEAELVLLEAFIILKKKERSGELLIPAIRSWMINKLPSIVIPNRFFFMESFPVSPSGKVNYELLVGSALLTKNVKDKVSNIDCSNLLQLIKKKKGSCSLHNRLDCCRQINTDRQDNHISMNHAENSSPLESRMILKDNDHDSFPSKRLKRGLIDVTSWGDESFPWYSPSLLSFSFSRCNKVLYKGKQAVIDTNQTTWSANVPRGSRGHMNNFWKVYLESCVDASPILVFKGTDIYLFIGSHSHKFLCINARSGSVQWEIKLKGRIECTAAIVSDFSQVVVGCYMGKIHFLDFLNGRICWIFQTSGEVKAQPVVDTCRQLIWCGSHDHNLYALDYKKHCCVYKLSCGGSIYGSPAIDEVRGLLYVASTGGRITAISISASPFTILWLHELEVPVFGSLAVAHNGTVICCLVDGHVLALDPNGSIVWKKTTDGPIFAGPCIPSVLPHEVLVCSRSGGVYSFKLEKGDLLWEYNVGDPITASAYVDEHLQLESDASHSSDRLVCICSSSGGIHLLRVNMNHSEDANQQRRDVQEFAKLNLPGDVFSSPLMIGGRIFVGCRDDYLHCIALEIPKQHES* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0167 1134 Pfam PQQ-like domain 855 893 IPR002372 -
Gso3g0167 1134 Pfam AMP-binding enzyme C-terminal domain 540 618 IPR025110 -
Gso3g0167 1134 Pfam PQQ-like domain 919 1116 IPR002372 -
Gso3g0167 1134 SMART ire1_9 829 862 IPR018391 -
Gso3g0167 1134 SMART ire1_9 957 988 IPR018391 -
Gso3g0167 1134 SMART ire1_9 1001 1031 IPR018391 -
Gso3g0167 1134 SMART ire1_9 785 820 IPR018391 -
Gso3g0167 1134 Pfam AMP-binding enzyme 154 531 IPR000873 -
Gso3g0167 1134 SUPERFAMILY Acetyl-CoA synthetase-like 70 625 - -
Gso3g0167 1134 Gene3D - 939 1127 IPR015943 GO:0005515
Gso3g0167 1134 Gene3D - 743 938 IPR015943 GO:0005515
Gso3g0167 1134 Gene3D - 122 525 IPR042099 -
Gso3g0167 1134 ProSitePatterns Putative AMP-binding domain signature. 265 276 IPR020845 -
Gso3g0167 1134 Gene3D - 526 633 IPR045851 -
Gso3g0167 1134 CDD A_NRPS 151 624 - -
Gso3g0167 1134 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 771 1124 IPR011047 -
Gso3g0167 1134 PANTHER EBONY 728 1127 - -
Gso3g0167 1134 PANTHER EBONY 6 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0167 Gso-Chr3 2133793 2147598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0167 264 624 Acyl Lipid Metabolism Gene Families AT5G36880 22.466 2.96e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0167 K00142 - gmx:100820175 1278.46