Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2631 ATGGCCATGTTGAAGAACTACCGTTGTCGTAGCATGTTGTTCAGAGGACCCGGTTCAGTGTCTTTCCGCTCCAATGCCAGCACTTGCAACAAGAGGAGCACACTCTGGAAGCCTCCACGAGCATCTGCAAGAAATGATTTTCGCCTCCTAATGGGCAGCTCAGCGGTAAAAAATAGGACACCGATTGAGGACATAAGGAGTCTGCGATTGATAACTGCGGTTAAAACTCCATACCTACCTGATGGCCAATTTGATCTTGACGCATATGATAACTTGGTGAATATGCAGATTGCAAATGGCGTTGAAGGCATTCTTGTTGCTGGCACAACTGGTGAGGGCCAATTAATGACATGGGATGAGCAAATAATGCTTATTGCACACACAGTTAACTGTTTTGGTGACCAAGTTAAGGTTGTTGGTAATGCGGGAAGCAACTGCACATCGGAGGCAATTAAGGCCACTGAGAGGGGTTTTGCTGTTGGAATGAATGCAGCACTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTTTGGTTGCTCACTATAATAGTGTGCTTTCCATAGGCCCCATCATCATATATAACATACCTACACGGACCAATCAAGACATTCCTCCTAGTGTAGTTCAAACCTTGGCTCAAAATCCTAACTTGGTTGGTATCAAGGAGTGTGTGGGAACTGAGAGGATAAAACAGTATACGGATCAAGGAATTGTTGTATGGACAGGAATTGATAAAATAAGCCATGATGCTAGATGGGGTTGTGGGGCTGTTGGGGTTCAATCTGTTGCTGGCAACTTGATTCCTGGTTTGATGAGAGAACTCATGTTTGAGGGCAAGAATCCTACACTGAATTCAAAGCTGATTCCTCTGTTCGATTGGCTTTCTCAAGCGCCTGTCCCTATTGCCTTGAACACTGCTCTCGCTCAACTTGGGATCATCAAACCAGTTTTCAGGCTACCCCATGTGCCCCTTCCTGTGGAAAAAAGGGTAGAGTTTGTCATTTTGGTTAAGGAAATGGGTCGACATCATTTTGTTGGACAAAAAGATGTTGAAGTTCTTGATGATGATGACTTCATAGTAGTTGGTCGATATTAA 1104 0.4429 MAMLKNYRCRSMLFRGPGSVSFRSNASTCNKRSTLWKPPRASARNDFRLLMGSSAVKNRTPIEDIRSLRLITAVKTPYLPDGQFDLDAYDNLVNMQIANGVEGILVAGTTGEGQLMTWDEQIMLIAHTVNCFGDQVKVVGNAGSNCTSEAIKATERGFAVGMNAALHINPYYGKTSLDGLVAHYNSVLSIGPIIIYNIPTRTNQDIPPSVVQTLAQNPNLVGIKECVGTERIKQYTDQGIVVWTGIDKISHDARWGCGAVGVQSVAGNLIPGLMRELMFEGKNPTLNSKLIPLFDWLSQAPVPIALNTALAQLGIIKPVFRLPHVPLPVEKRVEFVILVKEMGRHHFVGQKDVEVLDDDDFIVVGRY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2631 367 Pfam Dihydrodipicolinate synthetase family 68 341 IPR002220 GO:0016829
Ssu4g2631 367 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE 1 367 - -
Ssu4g2631 367 PRINTS Dihydrodipicolinate synthase signature 168 184 IPR002220 GO:0016829
Ssu4g2631 367 PRINTS Dihydrodipicolinate synthase signature 191 208 IPR002220 GO:0016829
Ssu4g2631 367 PRINTS Dihydrodipicolinate synthase signature 136 154 IPR002220 GO:0016829
Ssu4g2631 367 PRINTS Dihydrodipicolinate synthase signature 100 121 IPR002220 GO:0016829
Ssu4g2631 367 SUPERFAMILY Aldolase 70 336 - -
Ssu4g2631 367 ProSitePatterns Dihydrodipicolinate synthase signature 2. 196 226 IPR020625 GO:0016829
Ssu4g2631 367 ProSitePatterns Dihydrodipicolinate synthase signature 1. 103 120 IPR020624 GO:0016829
Ssu4g2631 367 SMART DHDPS_2 67 343 IPR002220 GO:0016829
Ssu4g2631 367 PANTHER DIHYDRODIPICOLINATE SYNTHASE 1 367 IPR002220 GO:0016829
Ssu4g2631 367 Gene3D Aldolase class I 61 367 IPR013785 -
Ssu4g2631 367 CDD DHDPS 69 336 IPR005263 GO:0008840|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2631 Ssu-Chr4 66905429 66907920 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2631 K01714 - gmx:100806626 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0876 3 21155914 21159643 Ssu4g2631 4 66905429 66907920 PCT