Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0179 ATGTTGAACAACAATTGTAGTAGCAGTTTATTGTTCAGAGGACCCGGTTTAGCCTTTTCCCACTCCATTGCCACCACTTGCAACAAGAGGAACACATGCTGGAAGGCTCCACAAGCAGCTGTAAGAAATGATTTTTGCCTCCCAATGAGCAGCTCCGCGGTAAAAAATAGGACATCAATTGGGGACATAAGGAGTCTGCGACTGATAACCGCGGTTAAAACTCCATACCTACCCAACGGCAAATTTGATCTTGAAGCATATGATAACTTGGTGAATATGCAGATCGCGAATGGCGTTGAAGGCATTCTTGTTGCTGGCACAACTGGTGAAGGCCAACTAATGACCTGGGATGAACAAATAATGCTCATTGCACACACAGTTAACAGTTTTGGCAACAAAGTTAAGGTTGTCGGTAATGCTGGAAGCAATTGCACATCAGAAGCAATCAAGGCCACTGAGAGAGGTTTTGCTGTTGGAATGAATGCTGCACTTCACATAAACCCTTACTATGGAAAAACCTCATTGGATGGTTTGGTTGCTCACTACAATAGTGTTCTTTCCATTGGTCCAATCATCATATACAACATACCAACAAGGACTAATCAAGATATTCCTCCTAGTGTGGTTCAAAATTTGGCTCAAAATCCTAACTTGGTTGGTTTAAAGGAGTGTGTGGGAAATGAGAGGATCAAACACTACACAGATCAAGGAATTGTTGTGTGGACAGGAATTGACAAAACAAGCCATGATGCTAGATGGGATTTTGGTGCTGTTGGAGTTCAATCCGTTGCCAGCAACTTGATTCCCGGTTTAATGAGAGAACTCATGTTTGAGGGCAAGAATGCTACACTGAATTCAAAGGTGATTCCTCTGTTTGATTGGCTCTCTCAGGAACCTGTTCCTATTGCTTTGAACACTGCTCTTGCTCAACTTGGTGTCATCAAACCGGTTTTCAGGCTACCCCTTTTGCCCTTGCTTGTGGAGAAAAGGATAGAGTTTGTCATGTTGGTGAAGGAAATTGGTAGAGAGCATTTTGTTGGAGACAAAGATGTGCAAGTTCTTGATGATGATGACTTTATCACAGTTGGTAGATATTAA 1098 0.4244 MLNNNCSSSLLFRGPGLAFSHSIATTCNKRNTCWKAPQAAVRNDFCLPMSSSAVKNRTSIGDIRSLRLITAVKTPYLPNGKFDLEAYDNLVNMQIANGVEGILVAGTTGEGQLMTWDEQIMLIAHTVNSFGNKVKVVGNAGSNCTSEAIKATERGFAVGMNAALHINPYYGKTSLDGLVAHYNSVLSIGPIIIYNIPTRTNQDIPPSVVQNLAQNPNLVGLKECVGNERIKHYTDQGIVVWTGIDKTSHDARWDFGAVGVQSVASNLIPGLMRELMFEGKNATLNSKVIPLFDWLSQEPVPIALNTALAQLGVIKPVFRLPLLPLLVEKRIEFVMLVKEIGREHFVGDKDVQVLDDDDFITVGRY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0179 365 Pfam Dihydrodipicolinate synthetase family 66 339 IPR002220 GO:0016829
Gso3g0179 365 ProSitePatterns Dihydrodipicolinate synthase signature 2. 194 224 IPR020625 GO:0016829
Gso3g0179 365 Gene3D Aldolase class I 59 365 IPR013785 -
Gso3g0179 365 SMART DHDPS_2 65 341 IPR002220 GO:0016829
Gso3g0179 365 PRINTS Dihydrodipicolinate synthase signature 98 119 IPR002220 GO:0016829
Gso3g0179 365 PRINTS Dihydrodipicolinate synthase signature 134 152 IPR002220 GO:0016829
Gso3g0179 365 PRINTS Dihydrodipicolinate synthase signature 166 182 IPR002220 GO:0016829
Gso3g0179 365 PRINTS Dihydrodipicolinate synthase signature 189 206 IPR002220 GO:0016829
Gso3g0179 365 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE 4 365 - -
Gso3g0179 365 CDD DHDPS 67 325 IPR005263 GO:0008840|GO:0009089
Gso3g0179 365 PANTHER DIHYDRODIPICOLINATE SYNTHASE 4 365 IPR002220 GO:0016829
Gso3g0179 365 SUPERFAMILY Aldolase 68 333 - -
Gso3g0179 365 ProSitePatterns Dihydrodipicolinate synthase signature 1. 101 118 IPR020624 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0179 Gso-Chr3 2319006 2322035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0179 K01714 - gmx:100806626 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2060 18 53537964 53541354 Gso3g0179 3 2319006 2322035 PCT
Gso9g2210 9 46447713 46451368 Gso3g0179 3 2319006 2322035 PCT
Gso3g0179 3 2319006 2322035 Gso18g2060 18 53537964 53541354 PCT
Gso3g0179 3 2319006 2322035 Gso9g2210 9 46447713 46451368 PCT