Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0765 ATGGCGATGCTGAAGACCTACAATAGCAGTGCGTGCTTCAGAGGATTCGAATTCCCTGTTCATCGTTCCAATGCCAATAAAAGAAGCTCATACTGGAAACCTCCACAAGCAGTTGTGATACCCAATTTCCACCTCCCAATGCGCAGCTTTGAGGTGAAAAATAGGACATCAACCGATGACATAAAGTGTCTGAGATTAATAACTGCCATTAAAACTCCATACCTACCTGATGGCCGATTTGATCTCGAAGCTTATGACGTCTTGGTTAAAACACAGATCGAACATGGTGTTGAAGGAATTATTGTTGGCGGCACAACTGGCGAAGGCCAACTAATGACCTGGGATGAACACATAATGCTAATTGGTCACACAGTCAATTGTTTCGGTGCGAAAATTAAGGTTGTTGGTAACACTGGAAGCAACTCCACAAGCGAAGCAATTCATGCTTCCGAGCAGGGTTTTGGTGTTGGAATGCACGCTGCCCTTCATATCAACCCTTACTACGGCAAAACCTCCATGGATGGTTTGGTTTCTCACTTTGATGGTGTGCTTTCCATGGGGCCTACTATCATATATAATGTACCTTCACGGACTGGTCAAGATATTCCTCCACATGTAATTCAAACCTTGGTTCATAATTCTAACCTGGCTGGTGTCAAGGAGTGTGTTGGAAATGACCGGATCAAACAATATACCAGTAACGGAATTGTCGTATGGAGTGGGAACGATGATCAATGCCATGATGCTAGATGGGACTATGGAGCTACAGGAGTGATATCTGTTACCAGCAACCTCGTTCCTGGTTTAATGCGCAAACTCATGTTCGGGGGCAAGAATTCTACACTAAATTCGAAAGTCGCGCCTCTGATCGATTGGCTTTTCCAGGAGCCGAATCCAATTGGTTTGAACACAGCTCTTGCTCAACTTGGGGTTGTGAGGCCAGTTTTCAGGCTACCATATGTACCTCTCTCTGTGGAAAAGAGGATAGAGTTTCACAATTTGGTGAAGGAAATTGGACGAGAGCATTTTGTTGGAGAAAAGGATGTTAGGGTTCTTGATGATGATGATTTTATCTTTGTTGACAGATATTAA 1092 0.4377 MAMLKTYNSSACFRGFEFPVHRSNANKRSSYWKPPQAVVIPNFHLPMRSFEVKNRTSTDDIKCLRLITAIKTPYLPDGRFDLEAYDVLVKTQIEHGVEGIIVGGTTGEGQLMTWDEHIMLIGHTVNCFGAKIKVVGNTGSNSTSEAIHASEQGFGVGMHAALHINPYYGKTSMDGLVSHFDGVLSMGPTIIYNVPSRTGQDIPPHVIQTLVHNSNLAGVKECVGNDRIKQYTSNGIVVWSGNDDQCHDARWDYGATGVISVTSNLVPGLMRKLMFGGKNSTLNSKVAPLIDWLFQEPNPIGLNTALAQLGVVRPVFRLPYVPLSVEKRIEFHNLVKEIGREHFVGEKDVRVLDDDDFIFVDRY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0765 363 SMART DHDPS_2 62 339 IPR002220 GO:0016829
Lan1g0765 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Lan1g0765 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Lan1g0765 363 Gene3D Aldolase class I 57 363 IPR013785 -
Lan1g0765 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 15 363 IPR002220 GO:0016829
Lan1g0765 363 SUPERFAMILY Aldolase 66 338 - -
Lan1g0765 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
Lan1g0765 363 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 15 363 - -
Lan1g0765 363 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Lan1g0765 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Lan1g0765 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Lan1g0765 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Lan1g0765 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Lan1g0765 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0765 Lan-Chr1 17862626 17865417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0765 K01714 - gmx:100788930 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g1000 13 14572943 14574998 Lan1g0765 1 17862626 17865417 PCT
Lan1g0765 1 17862626 17865417 Lan13g1000 13 14572943 14574998 PCT