Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3472 ATGAACATGTTAAAAGGTTATTGTAATAGCTCCTTCTTCAGAAAATCCACTTTACACCTTCTCCCCTCAAACTTCAATACCAGATTTTGCAAACTTCATCAAGCAGCTGCAAAACTTGACTTTTCCCTCCAGATGACCAGCTCAACACCAGTCAGGGCATCGATTGAGGATGTCCGTAGTTTGCGATTTATCACAGCGGTTAAGACTCCGTATTTACCTCATGGAAGAATTGATCTGGAAGCATATGATAACTTGGTGAATATACAAATTGCGAATGGCGTTGAAGGTATTCTTGTTGCTGGCTCAACTGGTGAAGGGCAGTTAATGACATGGGATGAACAGATAATGCTCATTGCTCATACGGTAAACTGTTTCGGACACAAAGTTAAGGTTATTGGTAATGCGGGAAGCAACTGTACAAAAGAAGCGATTGAGGCTACCGAGCGAGGTTTTGCGGTTGGAATGGATGCCGCTCTTCATATAAACCCTTACTATGGAAAAACCTCAATGAAAGGTTTGCTTGCTCATTATAATAGTTTGCTTTCTATAGGACCTGTCATTGTATACAATGTACCTTCAAGGAGTACTCAAGATATTCCTCCTGATGTGATTGAAGTATTGGCTCAAAACCCTAATTTTGTTGGTGTGAAAGAGTGTGTGGGAAATGAGAGGGTGAAACTGTATACTGATAAAGGGATTGTTGTGTGGGTTGTTGATGGATTGAGCCATGAAGGTAGATGGGATTGTGGTGCTGTTGGAGTTCAATCTGTTGCAAGTAATTTGGTTCCTGGTTTAATGAGGGAACTCATGTTTGAGGGTAAGAATCCTTCATTGAATTCAAAGCTTATGCGTTTGTTTGATTGGCTTTTTATAGAGCCTAGCCCTATTGCTTTGAGTACTGCTCTTGCTCAACTTGGGGTTATCAAGCCTGTTTTTAGGTTGCCATATGTACCTTTAAATGTGGAACAAAGGGAAGGGTTTGTGAATTTGGTGAAGGAAATGGGTAGGGAGAATTTTGTTGGAGAAAAGGATGTTCAAGTTCTTGAGGATGATGACTTTATCATAGTCTCTCGATATTAG 1080 0.4046 MNMLKGYCNSSFFRKSTLHLLPSNFNTRFCKLHQAAAKLDFSLQMTSSTPVRASIEDVRSLRFITAVKTPYLPHGRIDLEAYDNLVNIQIANGVEGILVAGSTGEGQLMTWDEQIMLIAHTVNCFGHKVKVIGNAGSNCTKEAIEATERGFAVGMDAALHINPYYGKTSMKGLLAHYNSLLSIGPVIVYNVPSRSTQDIPPDVIEVLAQNPNFVGVKECVGNERVKLYTDKGIVVWVVDGLSHEGRWDCGAVGVQSVASNLVPGLMRELMFEGKNPSLNSKLMRLFDWLFIEPSPIALSTALAQLGVIKPVFRLPYVPLNVEQREGFVNLVKEMGRENFVGEKDVQVLEDDDFIIVSRY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3472 359 PANTHER DIHYDRODIPICOLINATE SYNTHASE 1 359 IPR002220 GO:0016829
Psa4g3472 359 CDD DHDPS 62 331 IPR005263 GO:0008840|GO:0009089
Psa4g3472 359 Gene3D Aldolase class I 54 359 IPR013785 -
Psa4g3472 359 SUPERFAMILY Aldolase 64 335 - -
Psa4g3472 359 Pfam Dihydrodipicolinate synthetase family 62 333 IPR002220 GO:0016829
Psa4g3472 359 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE 1 359 - -
Psa4g3472 359 ProSitePatterns Dihydrodipicolinate synthase signature 1. 96 113 IPR020624 GO:0016829
Psa4g3472 359 ProSitePatterns Dihydrodipicolinate synthase signature 2. 189 219 IPR020625 GO:0016829
Psa4g3472 359 PRINTS Dihydrodipicolinate synthase signature 93 114 IPR002220 GO:0016829
Psa4g3472 359 PRINTS Dihydrodipicolinate synthase signature 129 147 IPR002220 GO:0016829
Psa4g3472 359 PRINTS Dihydrodipicolinate synthase signature 161 177 IPR002220 GO:0016829
Psa4g3472 359 PRINTS Dihydrodipicolinate synthase signature 184 201 IPR002220 GO:0016829
Psa4g3472 359 SMART DHDPS_2 60 335 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3472 Psa-Chr4 294803106 294804876 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3472 K01714 - gmx:100806626 513.072