Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0896 ATGGCGATGTTGAAGAGTTACTGTAGTAGTGCTTGCTTCAGAGGATTTGATTTCCCGGTTCATCGGTTCAATGCCGTTGATGGCAACAAAAGAAGCTCATACTTGAAGCCTACACAAGCAGCTGTGATACCCAATTTCCACCTCCCAATGCGCAGTTTCGAGGTGAAAAATAGGACATCAACCGAGGACATAAAGTGTCTCAGATTGATAACAGCCATCAAAACTCCATACCTACCCGACGGCCGATTTGATATTGAAGCTTATGATGGCCTGGTGAATACACAGATCGAAAATGGCGTTGAAGGAATTATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGACCTGGGATGAGCACATAATGCTTATTGGACACACAGTCAATTGTTTTGGTGGGAAAATTAAGGTTGTTGGTAACACTGGAAGCAATTCCACAAGGGAAGCAATTCATGGTTCTGAACAGGGTTTTGCCGTTGGAATGCATGCCGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCATGGATGGCTTGGTTTCTCATTTTGATGGTGTGCTTTCCATGGGCCCTAGCATCATATATAATGTACCTTCACGGAGCGGTCAAGACATTCCTCCACAGGTAATTCAAACCTTGGCTCATAATTCTAACTTGGCCGGTGTCAAGGAATGTGTGGGAAATGACCGTATCAAACAATATACCGATGATGGAATTGTCACGTGGAGTGGGAATGATGATCAATGCCATGATGCTCGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTACCAGCAACCTCGTTCCTGGTTTAATGCGCGAGTTAATGTTTGGCGGGGAAAACTCGACCCTAAATTCAAAGGTCATGCCTTTGGTTGATTGGCTTTTTCATGAGCCAAATCCAATTGGTTTAAACACAGCTCTTGCTCAACTTGGGGTCGTCCGGCCAGTTTTCCGGCTACCATATGTACCTCTCCCTGTGGAAAAGAGAATAGAGTTTGTCAATTTGGTGAAGGAAATTGGCCGAGAGCATTTTGTTGGAGAAAAAGATGTTCAAGTTCTAGATGATGATGATTTTATCTTAGTTGGTCGATATTAA 1101 0.4387 MAMLKSYCSSACFRGFDFPVHRFNAVDGNKRSSYLKPTQAAVIPNFHLPMRSFEVKNRTSTEDIKCLRLITAIKTPYLPDGRFDIEAYDGLVNTQIENGVEGIIVGGTTGEGQLMTWDEHIMLIGHTVNCFGGKIKVVGNTGSNSTREAIHGSEQGFAVGMHAALHINPYYGKTSMDGLVSHFDGVLSMGPSIIYNVPSRSGQDIPPQVIQTLAHNSNLAGVKECVGNDRIKQYTDDGIVTWSGNDDQCHDARWGYGATGVISVTSNLVPGLMRELMFGGENSTLNSKVMPLVDWLFHEPNPIGLNTALAQLGVVRPVFRLPYVPLPVEKRIEFVNLVKEIGREHFVGEKDVQVLDDDDFILVGRY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0896 366 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 69 335 IPR005263 GO:0008840|GO:0009089
Lal14g0896 366 ProSitePatterns Dihydrodipicolinate synthase signature 1. 102 119 IPR020624 GO:0016829
Lal14g0896 366 ProSitePatterns Dihydrodipicolinate synthase signature 2. 195 225 IPR020625 GO:0016829
Lal14g0896 366 SMART DHDPS_2 65 342 IPR002220 GO:0016829
Lal14g0896 366 SUPERFAMILY Aldolase 69 341 - -
Lal14g0896 366 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 25 366 - -
Lal14g0896 366 Pfam Dihydrodipicolinate synthetase family 67 340 IPR002220 GO:0016829
Lal14g0896 366 PRINTS Dihydrodipicolinate synthase signature 99 120 IPR002220 GO:0016829
Lal14g0896 366 PRINTS Dihydrodipicolinate synthase signature 135 153 IPR002220 GO:0016829
Lal14g0896 366 PRINTS Dihydrodipicolinate synthase signature 167 183 IPR002220 GO:0016829
Lal14g0896 366 PRINTS Dihydrodipicolinate synthase signature 190 207 IPR002220 GO:0016829
Lal14g0896 366 Gene3D Aldolase class I 60 366 IPR013785 -
Lal14g0896 366 PANTHER DIHYDRODIPICOLINATE SYNTHASE 25 366 IPR002220 GO:0016829
Lal14g0896 366 CDD DHDPS 68 338 IPR005263 GO:0008840|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0896 Lal-Chr14 11362644 11365887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0896 K01714 - gmx:100788930 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0896 14 11362644 11365887 Lal19g0228 19 2131794 2139588 LSH
Lal1g2054 1 22706785 22710759 Lal14g0896 14 11362644 11365887 PCT
Lal14g0896 14 11362644 11365887 Lal1g2054 1 22706785 22710759 PCT