Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0890 ATGTTGAAGAACCTTTGTAGTTGTAGCATGTCGTTCACAGGACCCGGTTCAGTGTTTTTCCACTCCGTTGCCAGAACTTGCAGCAAGAGAAAAGATCCCAGGAATACATACTGGAAGCCTCCACAAGCATCTGCAATAAATTATTTTCACCTTCCAATAAGCACTTCAGTGGTTAAAAACAGGACATCGATTGAGGGCATTAGGAGTCTGCGATTGATAACTGCAGTTAAAACCCCATACCTACCAAACGGCCAAATTGATCTTGATGCATATGATAACTTGGTGGATATGCAGATTGCAAAAGGCAGTGAAGGTATTCTTGTTGCAGGCTCAACTGGTGAAGGACAACTAATGACCTGGAGTGAGCAAATAATGCTTATTGCACACACAGTTAACTGTTTTGGAGACAAAGTTAAGGTTGTCGGTAATGCTGGAAGCAACTGCACATCAGAGGCAATTAAGGCCACTGAGAGGGGTTTTGCTGTTGGAATGAATGCTGCACTTCATATAAACCCTTACTATGGCAAAACCTCTTTGGATGGTTTGGTTGCTCACTATACAAGTGTACTTTCCATAGGCCCCATCATTATATATAACATACCAGCAAGGACTAATCAAGATATTCCTCCTAGTGTAGTTCAAACCTTGGCACAAAGTCCTAATTTTGTTGGTGTCAAGGAGTGTGTGGGAACTGAGAGGATCAAACAGTATACAGATGAAGGGATTGTTGTATGGACAGGAATTGATAAAATAAGCCATGATGCTAGATGGGATTTTGGTGCTGTTGGAGTTCAATCTGTTGCTGCCAACCTTGTTACTGGTTTGATGAGAGAACTCATGTTTGAAAACAAGAATGATACACTGAATTCAAAGCTGATTCCTCTGTTTGATTGGCTTTCTCAAGAGCCTGGCCCCATTGCTTTGAACACTGCTCTTGCTCAACTTGGAGTCATCAAACCAGTTTTCAGGCTACCCCATGTTCCCTTGCGTGTGGATAAAAGGGTAGAGTTTGTGAATTTGGTGAAGCAAATGGGTCGAGAGCATTTTGTTGGAGAAAAAGATGCTCAAGTTCTTGACGATGATGACTTCATCATAGTTGGTCGATATTGA 1110 0.4189 MLKNLCSCSMSFTGPGSVFFHSVARTCSKRKDPRNTYWKPPQASAINYFHLPISTSVVKNRTSIEGIRSLRLITAVKTPYLPNGQIDLDAYDNLVDMQIAKGSEGILVAGSTGEGQLMTWSEQIMLIAHTVNCFGDKVKVVGNAGSNCTSEAIKATERGFAVGMNAALHINPYYGKTSLDGLVAHYTSVLSIGPIIIYNIPARTNQDIPPSVVQTLAQSPNFVGVKECVGTERIKQYTDEGIVVWTGIDKISHDARWDFGAVGVQSVAANLVTGLMRELMFENKNDTLNSKLIPLFDWLSQEPGPIALNTALAQLGVIKPVFRLPHVPLRVDKRVEFVNLVKQMGREHFVGEKDAQVLDDDDFIIVGRY* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0890 369 Gene3D Aldolase class I 63 369 IPR013785 -
Pvu10g0890 369 ProSitePatterns Dihydrodipicolinate synthase signature 1. 105 122 IPR020624 GO:0016829
Pvu10g0890 369 ProSitePatterns Dihydrodipicolinate synthase signature 2. 198 228 IPR020625 GO:0016829
Pvu10g0890 369 CDD DHDPS 71 341 IPR005263 GO:0008840|GO:0009089
Pvu10g0890 369 SMART DHDPS_2 69 345 IPR002220 GO:0016829
Pvu10g0890 369 PRINTS Dihydrodipicolinate synthase signature 102 123 IPR002220 GO:0016829
Pvu10g0890 369 PRINTS Dihydrodipicolinate synthase signature 138 156 IPR002220 GO:0016829
Pvu10g0890 369 PRINTS Dihydrodipicolinate synthase signature 170 186 IPR002220 GO:0016829
Pvu10g0890 369 PRINTS Dihydrodipicolinate synthase signature 193 210 IPR002220 GO:0016829
Pvu10g0890 369 PANTHER DIHYDRODIPICOLINATE SYNTHASE 19 369 IPR002220 GO:0016829
Pvu10g0890 369 Pfam Dihydrodipicolinate synthetase family 70 343 IPR002220 GO:0016829
Pvu10g0890 369 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE 19 369 - -
Pvu10g0890 369 SUPERFAMILY Aldolase 72 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0890 Pvu-Chr10 31876393 31879238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0890 K01714 - gmx:100806626 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0767 8 7123873 7127264 Pvu10g0890 10 31876393 31879238 PCT