Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0850 ATGTTACTGTACCCTCTAAAAACCCTCCACAGAGCACCGTTACAACTGTCATTCAAACTTGCATCCAAACTGTTCCACGAACTCAAACATGAACACCACCCAAATGCTGCCTCAGTTAACCATTCCATGCTCAACCATTTGCACCGCAACCTTCCCTTTCAAGCTCTTGTTGCATTCAAGAACCACTTCCAGTTGCATTCTCTTGAAAACGTCGATGAGGTCGCCGTTGCCTTGTCCCTCAAGGCATGTCAAGGAGAGTCAAAACTCGGGTGTCAAATCCATGGATTTGCGGTATCTAGTGGGTTTGTTTCGTTTGTCACGGTGTCAAATTCGCTCATGAAAATGTACTGCAAGTCTGGGAATTTTGGAAAAGCTTTGATTGTGTTTGAGAATTTGAGTCATCCTGACATAGTGTCTTGGAATACTGTGCTTTCAGGGTTTGATGAGAGCGTGGATGCTTTGAATTTTACACGTTATATGCATTTTCGTGGGATAGCTTTTGATCCGTTTACATATACTACAGCTCTTGCATTTTGTCGGGGTGATCATGGGGTTTTATTTGGGTGGCAATTGCATTCTCTTGTGGTTAAGTGTGGATTTGGTTGTGAAGTTTTTATAGGGAATGCACTTGTAACAATGTATTCTAGGTGGGGGGTGTTAGATGAAGCTAGGATAGTGTTTGATGAAATGCCTGAAAGAGATTTGGTTTCATGGAGTGCAATGCTTTCAGGTTATGCTCAAGAGGGGGAATGTTATGGGTTGGAAGCAGTCTTATTGTTTGTCAACATGGTAAGACAAGGTATGGTAATTGACCATGTTGCACTTACAGGTGCAGTTTCAGCTTGTGGTTATATGAAAAACTTAGAGCTAGGGAGGCAGATACATGGTTTGACCCTAAAAGTGGGATATGGAATGCATGTTTCGGTTTGCAATGTGTTGATGTCAACTTATTCAAAATGTGAGGTCCCTAAAGATTCAAAAGCTGTTTTTGAGTGCATTAGTAACCGGAATGTAGTGTCTTGGACAACAATGATTTCTATTGTCGAAGAAGATGCAGTGTCTCTCTTTAATGCAATGAGAATTGATGGTGTGTATCCAAATGAAGTTACATTTACAGGATTAATACATGCTGTAAAAATCAGGAGTTTAGTGACAGAAGGTCTAACGATTCATGGGTTATGCATAAAAAGCTGCTTTTTGTCAGAACAAACGGTCTCCAATAGTCTGATTACCATGTATGCCAAGTTTGAGTGCATTAAAGAATCAAACAAGATTTTTGAGGAGCTTAACTGTCGAGAAACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAATGGCATGTATAAAGAAGCTTTGCTTACATTTTTCTCTGCGGTTAAGGAGATAAAGCCCAATCAATACGCATTTGGAAGTGTGTTAAATGCTATTGCTTCTGCTGAGGATATATCATTGAAACATGGGCAGCGTTGCCATTCTCACTTGCTCAAACTGGGTTTAAGCACCGATCCAATTGTTTCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAGACATAATTGAGTCTCAAAGAGTGTTCAATGAGACACTTGAGCGTACCCAATTTGCTTGGACAGCAATAATATCAGCATATGCCCGCCATGGAGACTTTGAGTCAGTGATGAGTTTGTATACAAAAATGGAGAGGGAAGGAATCAGTCCTGACTCCATCACTTTCCTTTCTGTTTTGGCTGCATGTTGTAGAAAGGGCATGGTTGATATAGGCCATAGAGTCTTTGACTCTATGGTGAAAAAACATTCAATTGAGCCAACCTCTGAGCATTATTCTATTATGGTGGACATGTTGGGCCGAGTTGGACAACTAGATGAGGCAGAAGAGTTGATGCACCAGATTCCGGGAGGGCCTGGATTGTCAGTTTTGCAAAGTTTGCTTGGGTCTTGTAGATTACATGGGAATATGGAGATGGCTGAGAAGGTTGTTGGTAGATTGATAGAAATGGATCCTGCTAGTTCAGGTCCATATGTGTTAATGGCAAACTTGTATGCTGAGAAAGGGAAGTGGGAGAAAGTTGCTGAAGTGCGAAGAGGAATGAGAGGGAAGGGAGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTTCTGATAATTTTTTAGCGCTATGTGCAAGCGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGCGGAGACCCAACTGGAACTGGCAAAGGGGGTACCAGTATCTGGGGCAAGAAATTTAATGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGGGGAATATTGGCAATGGCCAACAGTGGTCCCAATACTAATGGAAGCCAATTTTTCATAACTTATGCAAAGCAGCCCCATTTAAATGGGCTATACACCATATTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACACAAACAGGGGCAGGGGATCGACCACTTGCAGAGATTAGGCTCAATCGTGTAACAATGCATGCTAATCCCCTTGCTGGTTAG 2556 0.4159 MLLYPLKTLHRAPLQLSFKLASKLFHELKHEHHPNAASVNHSMLNHLHRNLPFQALVAFKNHFQLHSLENVDEVAVALSLKACQGESKLGCQIHGFAVSSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFDESVDALNFTRYMHFRGIAFDPFTYTTALAFCRGDHGVLFGWQLHSLVVKCGFGCEVFIGNALVTMYSRWGVLDEARIVFDEMPERDLVSWSAMLSGYAQEGECYGLEAVLLFVNMVRQGMVIDHVALTGAVSACGYMKNLELGRQIHGLTLKVGYGMHVSVCNVLMSTYSKCEVPKDSKAVFECISNRNVVSWTTMISIVEEDAVSLFNAMRIDGVYPNEVTFTGLIHAVKIRSLVTEGLTIHGLCIKSCFLSEQTVSNSLITMYAKFECIKESNKIFEELNCRETISWNALISGYAQNGMYKEALLTFFSAVKEIKPNQYAFGSVLNAIASAEDISLKHGQRCHSHLLKLGLSTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTKMEREGISPDSITFLSVLAACCRKGMVDIGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGQLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGKGVKKEVGFSWVDVSDNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTMHANPLAG 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0850 851 PANTHER OS07G0670000 PROTEIN 464 550 - -
Aed2g0850 851 Gene3D Tetratricopeptide repeat domain 17 148 IPR011990 GO:0005515
Aed2g0850 851 Gene3D Tetratricopeptide repeat domain 349 486 IPR011990 GO:0005515
Aed2g0850 851 Gene3D Tetratricopeptide repeat domain 149 297 IPR011990 GO:0005515
Aed2g0850 851 PANTHER OS07G0670000 PROTEIN 23 461 - -
Aed2g0850 851 CDD Cyclophilin_PPIL3_like 718 843 - -
Aed2g0850 851 SUPERFAMILY Cyclophilin-like 716 847 IPR029000 -
Aed2g0850 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Aed2g0850 851 Gene3D - 718 851 IPR029000 -
Aed2g0850 851 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 717 844 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 Gene3D Tetratricopeptide repeat domain 487 587 IPR011990 GO:0005515
Aed2g0850 851 Pfam PPR repeat family 536 583 IPR002885 -
Aed2g0850 851 PANTHER OS07G0578800 PROTEIN-RELATED 548 734 IPR045215 GO:0003723|GO:0009451
Aed2g0850 851 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 717 843 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 Pfam E motif 652 714 IPR046848 -
Aed2g0850 851 TIGRFAM PPR: pentatricopeptide repeat domain 572 606 IPR002885 -
Aed2g0850 851 TIGRFAM PPR: pentatricopeptide repeat domain 538 571 IPR002885 -
Aed2g0850 851 TIGRFAM PPR: pentatricopeptide repeat domain 435 457 IPR002885 -
Aed2g0850 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 270 IPR002885 -
Aed2g0850 851 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 605 IPR002885 -
Aed2g0850 851 SUPERFAMILY TPR-like 510 671 IPR011990 GO:0005515
Aed2g0850 851 PANTHER OS07G0578800 PROTEIN-RELATED 23 461 IPR045215 GO:0003723|GO:0009451
Aed2g0850 851 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 733 745 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 791 803 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 776 791 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 804 819 IPR002130 GO:0000413|GO:0003755
Aed2g0850 851 PANTHER OS07G0578800 PROTEIN-RELATED 464 550 IPR045215 GO:0003723|GO:0009451
Aed2g0850 851 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 728 745 IPR020892 GO:0003755|GO:0006457
Aed2g0850 851 Gene3D Tetratricopeptide repeat domain 588 717 IPR011990 GO:0005515
Aed2g0850 851 Pfam PPR repeat 435 457 IPR002885 -
Aed2g0850 851 Pfam PPR repeat 208 234 IPR002885 -
Aed2g0850 851 Pfam PPR repeat 110 130 IPR002885 -
Aed2g0850 851 Pfam PPR repeat 407 429 IPR002885 -
Aed2g0850 851 Pfam PPR repeat 609 632 IPR002885 -
Aed2g0850 851 Pfam PPR repeat 236 251 IPR002885 -
Aed2g0850 851 PANTHER OS07G0670000 PROTEIN 548 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0850 Aed-Chr2 6519926 6524789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0850 71 736 Glycoside Hydrolase AT3G49170 31.060 9.95e-106 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0850 - - cam:101513383 1137.48