Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01301 ATGAGCAGCTCAGAGGTGAAAATTAGGACATCGATTGAGGACATAAGGAGTCTAAGATTCATAACTGCTGTTAAAACTCCATACCTACCTAATGGCCAAATCGACCTTGAAGCATATGATAACTTGGTGAATATGCAGATTGCAAATGGCGTTGAAGGTATTCTTGTTGCTGGCACAACTGGTGAAGGCTTTCTAATGACCTGGGATGATCAAATAATGCTTATTGCGCACACAGTCAACTGTTTTGGTGATAAAGTTAAGGTTATTGGTAATGCTGGAAGCAACTGCACATCAGAAGCAATTAAGGCCACTGAGCGAGGTTTTGCTGTTGGAATGCATGCTGCCCTTCATATTAGTCCTTACTATGGCAAAACCTCCTTGGATGGCTTACTTGCTCACTATAATAGTGTGCTTTCTATAGGCCCCATCATCATTTATAATATACCAGTAAGAACTGCTCAAGATATTCCTCCAAGTGTGGTTGAAATCTTGGCTAAAAATCCTAACTTGGTTGGTGTCAAGGAGTGTGCTGGAATTGACAGGATTAAAAAGTATACAGATAAAGGACTTGTTGTATGGACTGGGTATGATAAAGAAAGCCATGAAGCTAGATGGGATTGTGGGGCTATTGGAGTTCAATCTGTTGCTAGCAACCTGATCCCTGGTTTAATGAGAGAACTCATGTTTGGGGGCAAGAATCCTACTCTGAATTCAAGGCTAATACCTCTGTTTGAATGGCTTTCCCAGGAGCCAGGCCCAATTGCTTTGAACACAGCTCTTGCTCAACTTGGGGTTATCAAACCTGTTTTCAGGCTACCACAAGTACCTCTGCGTAAAGAAAAAAGGGTAGAGTTTGTCAAATTGGTGGAGGAAATGGGTCGACAGCATTTTGTTGGAGATAAAGATGTTCAAGTTCTGGATGACCATGACTTCATCTTAGTTGGTCGATATTGA 954 0.4161 MSSSEVKIRTSIEDIRSLRFITAVKTPYLPNGQIDLEAYDNLVNMQIANGVEGILVAGTTGEGFLMTWDDQIMLIAHTVNCFGDKVKVIGNAGSNCTSEAIKATERGFAVGMHAALHISPYYGKTSLDGLLAHYNSVLSIGPIIIYNIPVRTAQDIPPSVVEILAKNPNLVGVKECAGIDRIKKYTDKGLVVWTGYDKESHEARWDCGAIGVQSVASNLIPGLMRELMFGGKNPTLNSRLIPLFEWLSQEPGPIALNTALAQLGVIKPVFRLPQVPLRKEKRVEFVKLVEEMGRQHFVGDKDVQVLDDHDFILVGRY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01301 317 PRINTS Dihydrodipicolinate synthase signature 86 104 IPR002220 GO:0016829
Rops4g01301 317 PRINTS Dihydrodipicolinate synthase signature 141 158 IPR002220 GO:0016829
Rops4g01301 317 PRINTS Dihydrodipicolinate synthase signature 50 71 IPR002220 GO:0016829
Rops4g01301 317 PRINTS Dihydrodipicolinate synthase signature 118 134 IPR002220 GO:0016829
Rops4g01301 317 ProSitePatterns Dihydrodipicolinate synthase signature 2. 146 176 IPR020625 GO:0016829
Rops4g01301 317 Gene3D Aldolase class I 11 317 IPR013785 -
Rops4g01301 317 CDD DHDPS 19 289 IPR005263 GO:0008840|GO:0009089
Rops4g01301 317 PANTHER DIHYDRODIPICOLINATE SYNTHASE 9 301 IPR002220 GO:0016829
Rops4g01301 317 SMART DHDPS_2 17 293 IPR002220 GO:0016829
Rops4g01301 317 Pfam Dihydrodipicolinate synthetase family 19 291 IPR002220 GO:0016829
Rops4g01301 317 SUPERFAMILY Aldolase 21 292 - -
Rops4g01301 317 PIRSF DHDPS 13 304 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01301 Rops-Chr4 34444375 34446206 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01301 K01714 - gmx:100806626 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02161 8 50048825 50051744 Rops4g01301 4 34444375 34446206 PCT