Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02123 ATGTTCAACAACTATTGTAGTAGTACCATGTTGTTCACAGGACCCTCTTCACTGTTTTTCCGCCCCATTACCACCACTTCCAACAACAGGAACACATACTGGAAGCCTACACAAGTAGCTTCAAGAAATGATTTTCGCCTCCCAATGACTAGCTCAGCGGTAAAGAATAGGACATCAATTGAGGACATAAAGAGTCTGCGATTGATAACTGCGGTTAAAACTCCATACCTACCTAATGGCCAATTTGATCTTGATGCATATGATAACTTGGTGAATATGCAAATTGCACATGGCATTGAAGGCATTCTTGTTGCTGGTTCAACTGGTGAAGGCCAACTAATGACCTGGGATGATCAAATAATGCTAATTGCTCACACAGTTAACTGTTTTGGTGACAAAGTTAAGATTATTGGTAATGCAGGAAGCAACTGCACATCAGAGGCAATTAAGGCCACTGAAAGGGGTTTTGCTGTTGGAATGAATGCTGCACTTCACATAAACCCTTACTATGGCAAAACCTCATTGGATGGTTTGGTTGCTCACTACAATAGTGTGCTTTCCATTGGCCCCATCATCATATACAATATACCAACAAGGACTAATCAAGATATTCCTCCTAGTGTAGTTAGAATCTTGGCTCAAAGTCCTAACTTGGTCGGTGTGAAGGAGTGTGTGGGGAATGACAGGATCAAAGAGTACACAAGTGAAGGAATTGTTGTGTGGACAGGAATTGATAAAATGAGCCATGATGCTAGATGGTGTTGTGGGGCTGTTGGTGTTCAATCTGTTGCTGCCAACTTGGTTCCTGGTTTAATGAGAGAGCTCATGTTTGAGGGCAAGAATGTTGCTCTGAATTCAAAGGTGATTCCTCTGTTTGATTGGCTTTCTCAAGAGCCTTCGCCTATTGCTTTGAACACTGCTCTTGCTCAACTTGGAGTCATCAAACCAGTTTTCAGGCTACCCCATGTGCCACTCCCTGTGGACAAAAGGATAGAGTTTGTCAATTTGGTGGAGCAAATGGGACGAGAGCATTTTGTTGGAGAAAAAGATGTTCAAGTTCTTGATGATGATGACTTTATCATAGTTGGTCGATATTATACTTATTAG 1107 0.4182 MFNNYCSSTMLFTGPSSLFFRPITTTSNNRNTYWKPTQVASRNDFRLPMTSSAVKNRTSIEDIKSLRLITAVKTPYLPNGQFDLDAYDNLVNMQIAHGIEGILVAGSTGEGQLMTWDDQIMLIAHTVNCFGDKVKIIGNAGSNCTSEAIKATERGFAVGMNAALHINPYYGKTSLDGLVAHYNSVLSIGPIIIYNIPTRTNQDIPPSVVRILAQSPNLVGVKECVGNDRIKEYTSEGIVVWTGIDKMSHDARWCCGAVGVQSVAANLVPGLMRELMFEGKNVALNSKVIPLFDWLSQEPSPIALNTALAQLGVIKPVFRLPHVPLPVDKRIEFVNLVEQMGREHFVGEKDVQVLDDDDFIIVGRYYTY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02123 368 PRINTS Dihydrodipicolinate synthase signature 98 119 IPR002220 GO:0016829
Cca01g02123 368 PRINTS Dihydrodipicolinate synthase signature 134 152 IPR002220 GO:0016829
Cca01g02123 368 PRINTS Dihydrodipicolinate synthase signature 166 182 IPR002220 GO:0016829
Cca01g02123 368 PRINTS Dihydrodipicolinate synthase signature 189 206 IPR002220 GO:0016829
Cca01g02123 368 SMART DHDPS_2 65 341 IPR002220 GO:0016829
Cca01g02123 368 Pfam Dihydrodipicolinate synthetase family 66 339 IPR002220 GO:0016829
Cca01g02123 368 ProSitePatterns Dihydrodipicolinate synthase signature 2. 194 224 IPR020625 GO:0016829
Cca01g02123 368 CDD DHDPS 67 337 IPR005263 GO:0008840|GO:0009089
Cca01g02123 368 PANTHER DIHYDRODIPICOLINATE SYNTHASE 11 365 IPR002220 GO:0016829
Cca01g02123 368 Gene3D Aldolase class I 59 365 IPR013785 -
Cca01g02123 368 SUPERFAMILY Aldolase 68 340 - -
Cca01g02123 368 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE 11 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02123 Cca-Chr1 48744374 48747324 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02123 K01714 - gmx:100806626 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01825 07 44878050 44881715 Cca01g02123 01 48744374 48747324 PCT