Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00729 ATGTTAAAAGCTTATTGTAGTAGCTCCTTCTTCACAAGATCCAATTTACACCTTCTCCCCTCAAACTTCAATACAAGATTTTGCAAAATGAATCAAGCAGCTGCAAGACTTGATGTTCCCCTCCAGATCAGCACCTCAACAGTTGTCAAAGATAGGAAATCGATTGAGGATTTACGTAGTTTGCGACTTATCACAGCGGTTAAGACTCCGTATTTACCTCAAGGAAAAATTGATCTGGAAGCATATGATAACTTGGTGAATATACAAATTGTGAATGGCGTTGAAGGTATTCTTGTTGCTGGCTCAACTGGTGAAGGCCATTTAATGACATGGGATGAACAGATAATGCTGATTGCTCATACAGTCAACTGTTTCGGCGACAAAGTTAAAGTTATCGGTAATGCAGGAAGCAACTGTACAAATGAAGCGATTGAGGCGACCGAGCGAGGTTTTGCTGTTGGAATGGATGCAGCACTTCATATAAACCCTTACTATGGAAGAACCTCAATGAAAGGTTTGGTTGCACATTACAATAGTTTGCTTTCTATAGGACCTGTCATTATATACAATGTACCTGCAAGGAGTGGTCAAGATGTCCCTCCTAGTGTGGTTGAAATTTTGGCTCAAAACCCTAATTTGGTTGGTGTGAAAGAGACTGTGGGAGGTGAGAGGGTGAAAATGTATACTGATAAAGGGATTGTTGTGTGGGGAGTTGATAGTTTGAGCCATGAAGCTAGATGGGATTGTGGTGCTGTTGGAGTTCAATCTGTTGCAAGTAACTTGGTTCCTGGTTTAATGAAAGAACTCATGTTTGAGGGTAAGAATCCTTTATTGAATTCAAAGCTTACCCCTTTGTTTGATTGGCTTTTTTCAGAGCCAAGCCCTATTGCTTTGAACACTGCTCTTGCTCAACTTGGGGTTATCAAGCCTGTTTTTAGGTTGCCATATGTACCTCTAAATATAGAACAAAGGGTAGAGTTTGTGAATTTGGTGAAGGAAATGGGTAGAGAGAATTTTGTTGGAGAAAAAGATGTTCAAGTTCTCGATGATGATGACTTTATTGTTGTTGCTCGATATTAG 1080 0.4 MLKAYCSSSFFTRSNLHLLPSNFNTRFCKMNQAAARLDVPLQISTSTVVKDRKSIEDLRSLRLITAVKTPYLPQGKIDLEAYDNLVNIQIVNGVEGILVAGSTGEGHLMTWDEQIMLIAHTVNCFGDKVKVIGNAGSNCTNEAIEATERGFAVGMDAALHINPYYGRTSMKGLVAHYNSLLSIGPVIIYNVPARSGQDVPPSVVEILAQNPNLVGVKETVGGERVKMYTDKGIVVWGVDSLSHEARWDCGAVGVQSVASNLVPGLMKELMFEGKNPLLNSKLTPLFDWLFSEPSPIALNTALAQLGVIKPVFRLPYVPLNIEQRVEFVNLVKEMGRENFVGEKDVQVLDDDDFIVVARY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00729 359 SMART DHDPS_2 60 335 IPR002220 GO:0016829
Vifa4g00729 359 Gene3D Aldolase class I 54 359 IPR013785 -
Vifa4g00729 359 SUPERFAMILY Aldolase 63 335 - -
Vifa4g00729 359 ProSitePatterns Dihydrodipicolinate synthase signature 2. 189 219 IPR020625 GO:0016829
Vifa4g00729 359 ProSitePatterns Dihydrodipicolinate synthase signature 1. 96 113 IPR020624 GO:0016829
Vifa4g00729 359 PRINTS Dihydrodipicolinate synthase signature 129 147 IPR002220 GO:0016829
Vifa4g00729 359 PRINTS Dihydrodipicolinate synthase signature 161 177 IPR002220 GO:0016829
Vifa4g00729 359 PRINTS Dihydrodipicolinate synthase signature 93 114 IPR002220 GO:0016829
Vifa4g00729 359 PRINTS Dihydrodipicolinate synthase signature 184 201 IPR002220 GO:0016829
Vifa4g00729 359 Pfam Dihydrodipicolinate synthetase family 61 333 IPR002220 GO:0016829
Vifa4g00729 359 CDD DHDPS 62 331 IPR005263 GO:0008840|GO:0009089
Vifa4g00729 359 PANTHER DIHYDRODIPICOLINATE SYNTHASE 48 344 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00729 Vifa-Chr4 212221103 212222409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00729 K01714 - gmx:100806626 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01404 5 407782260 407784485 Vifa4g00729 4 212221103 212222409 PCT