Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02139 ATGGCTGGCTCAGAACCTGTAAGTGCAGAAGGAGAGAATATGGCAGTGGATGCTGTGCCAAGGAAGCCCCGGATTCTACTTGCTGCTAGTGCGAGTGTTGCTGCTATCAAATTTGCAAATCTTTGTCATTGTTTCTCTGAATGGGCGGATGTAAAAGCAGTTGCCACAAGTGCATCTTTGCATTTCATTGATAGAGCTTCGATGCCTAAGGATGTAATTTTATACACGGATGAGGACGAATGGTCTAGTTGGACGAAACTAGGCGATAGCGTGCTTCACATTGAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCCAACACCCTTGCAAAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGCATCGTGCGAGCCTGGGACTTCAACAAGCCATTCTTTGTTGCTCCAGCCATGAACACTCTTATGTGGAACAATCCTTTCACTGAGCGGCATCTCATTGGCATTGATGAGCTTGGCATTTCTCTCATTCCACCTGTTACGAAGAGGTTAGCATGTGGGGATTATGGCAATGGTGCCATGGCTGAACCTTCTACCATTTACTCAACTGTAAGGCTCTTCTATGAGTCAAAGGCTCAGCAAGGTAATGGTGATATCTGA 636 0.4623 MAGSEPVSAEGENMAVDAVPRKPRILLAASASVAAIKFANLCHCFSEWADVKAVATSASLHFIDRASMPKDVILYTDEDEWSSWTKLGDSVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDFNKPFFVAPAMNTLMWNNPFTERHLIGIDELGISLIPPVTKRLACGDYGNGAMAEPSTIYSTVRLFYESKAQQGNGDI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02139 211 PANTHER HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY 12 203 - -
Cca01g02139 211 PANTHER BNAA01G27100D PROTEIN 12 203 - -
Cca01g02139 211 SUPERFAMILY Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 22 199 IPR036551 GO:0003824
Cca01g02139 211 Gene3D - 22 210 IPR036551 GO:0003824
Cca01g02139 211 Pfam Flavoprotein 24 197 IPR003382 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02139 Cca-Chr1 49063372 49066002 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02139 K01598 - gmx:100499989 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01839 07 45031757 45039235 Cca01g02139 01 49063372 49066002 PCT
Cca01g02139 01 49063372 49066002 Cca07g01838 07 45023293 45024239 PCT