Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01358 ATGTCGAAAGGTTCCAATTTACCGGTTTCCACCTCTATCACCAACAACTTCAATCGCAGGACATCGATTGAGGACATACGGAGTCTGAGAATTATCACCGCGATTAAAACTCCGTACTTACCTAGTGGAAGTTTTGATCTTGAAACATATGATAACTTGGTGAACACACAAATTGAAAATGGTGTTGAAGGTATTCTTGTTGCTGGTTCAACTGGTGAAGGCCAATTAATGACATGGGATGAACAAATAATGCTCATTGCTCACACAGTAAATTGTTTCGGCGACAAAGTTAAAGTTATTGGCAATGCAGGAAGCAACTGCACAAAAGAAGCTATTAACGCAACCGAACGAGGTTTTGCCGTTGGAATGGATGCTGCACTTCATATAAACCCTTACTATGGAAAAACCTCAATGAAAGGTTTAGTTGCTCATTATAATAGTTTGCTTCCTATAGGACCTCTCATTATATACAATGTACCTGCAAGAACTAATCAAGATATTCCTCCTAGTGTGGTCGAAATATTGGCTCAAAACCATAATTTTGTTGGCATCAAAGAGACTATGGGAAGTGAGAGGGTGAAAATGTATACTGATAAAGGAATTGTTGTGTGGGGAGTTGATGGATCAGTTCATGAAGCTAGATGGGATTGTGGTGCTGTTGGAGTTCAATCTGTAGCAAGCAATTTGGTTCCTGGTTTAATGAGGGAACTTATGTTTGAGGGTAAGAATCCAACACTTAATTCAAAGCTTATGCCTTTGTTTGATTGGCTTTTTATAGAGCCAAGCCCTATTGCTTTGAACACTGCTCTTGCTCAACTTGGGGTTATTAAGCCTGTTTTCAGGCTACCATATGTACCTCTGTCTAAGGAACAAAGGGTAGGGTTTGTGAATTTGGTGAAGGAAATGGGTAGAGAACATTTTGTTGGAGAAAAAGATGTTCAAGTTCTTGAGGATGATGATTTTATCATAGTCGATCGATATTGA 984 0.3913 MSKGSNLPVSTSITNNFNRRTSIEDIRSLRIITAIKTPYLPSGSFDLETYDNLVNTQIENGVEGILVAGSTGEGQLMTWDEQIMLIAHTVNCFGDKVKVIGNAGSNCTKEAINATERGFAVGMDAALHINPYYGKTSMKGLVAHYNSLLPIGPLIIYNVPARTNQDIPPSVVEILAQNHNFVGIKETMGSERVKMYTDKGIVVWGVDGSVHEARWDCGAVGVQSVASNLVPGLMRELMFEGKNPTLNSKLMPLFDWLFIEPSPIALNTALAQLGVIKPVFRLPYVPLSKEQRVGFVNLVKEMGREHFVGEKDVQVLEDDDFIIVDRY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01358 327 ProSitePatterns Dihydrodipicolinate synthase signature 2. 157 187 IPR020625 GO:0016829
Trre15g01358 327 Gene3D Aldolase class I 22 327 IPR013785 -
Trre15g01358 327 SUPERFAMILY Aldolase 31 302 - -
Trre15g01358 327 PRINTS Dihydrodipicolinate synthase signature 97 115 IPR002220 GO:0016829
Trre15g01358 327 PRINTS Dihydrodipicolinate synthase signature 61 82 IPR002220 GO:0016829
Trre15g01358 327 PRINTS Dihydrodipicolinate synthase signature 152 169 IPR002220 GO:0016829
Trre15g01358 327 PRINTS Dihydrodipicolinate synthase signature 129 145 IPR002220 GO:0016829
Trre15g01358 327 SMART DHDPS_2 28 303 IPR002220 GO:0016829
Trre15g01358 327 CDD DHDPS 30 292 IPR005263 GO:0008840|GO:0009089
Trre15g01358 327 ProSitePatterns Dihydrodipicolinate synthase signature 1. 64 81 IPR020624 GO:0016829
Trre15g01358 327 Pfam Dihydrodipicolinate synthetase family 29 301 IPR002220 GO:0016829
Trre15g01358 327 PIRSF DHDPS 24 314 IPR002220 GO:0016829
Trre15g01358 327 PANTHER DIHYDRODIPICOLINATE SYNTHASE 7 312 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01358 Trre-Chr15 10532540 10534180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01358 K01714 - gmx:100806626 511.146