Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2395 ATGGCGGCGATGCTGAAGAGCTATAGTAGCAATGCGTGCTTCCCTGCTTCTGGTTTCGCTGTTTTTCGCTCCAACAATGCCACCAACGCCAGTAACAAGAGGAGCTCAAACTGGAAGCCTCCACAGGCAGCTATCATACCCAATTTGCATCTCCCAATGCGCAGCTTTGAGGTGAAAAATAGGACATCAACTGAGGACATAAAGTGTCTGAGATTGATAACTGCGCTCAAAACTCCATACCTACCTGATGGCCGATTTGATCTAGAAGCGTATGATGATTTGGTGAACAAGCAAATTGAAAACGGTGTAGAAGGTATTATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGATGAACACATCATGCTTATCGGGCACACGGTCAATTGTTTTGGCAGTAAAATCAAGGTTGTTGGTAACACCGGAAGTAACTCCACGAGGGAAGCAATCCATGCCAGTGAGCAGGGTTTTGCAGTTGGAATGCATGCTGCCCTTCATATAAACCCTTACTACGGCAAAACCTCCCTGGACGGTATGATTTCTCACTTCGAAAGCGTGATTTCCATGGGCCCTACAATCATATATAATGTTCCTTCGAGGACTGGTCAAGATATTCCTCCTCACGTGATTCAAACCTTGGCTCAAAGTGCTACCTTGGCCGGTGTCAAGGAGTGTGTTGGAAACGATCGGATCAAACAGTACACGGATGATGGCATTGTTGTGTGGAGTGGCAACGATGATCAATGCCATGATGCTAGATGGGGCTATGGTGCCACCGGAGTGATATCTGTCACCAGCAACCTTGTTCCTGGTTTGATGCGAGACATCATGTTTGCAGGGAAGAATCCAACATTGAATTCAAAGCTCCTTCCTCTGATGGACTGGCTTTTCCAGGAGCCAAACCCGATTGGTTTAAACACAGCTCTTGCCCAACTTGGGGTTGTCAGACCGGTTTTCAGGCTGCCGTACGTGCCGCTCCCTGCGGAGAAAAGGATTGAGTTTGTGAACTTGGTGAAGCAAATTGGCCGAGAGCATTTTGTTGGAGACAAAGATGTTCAGGTTCTTGATGATGATGATTTTATCTTAGTTGGTCGATATTAG 1110 0.4676 MAAMLKSYSSNACFPASGFAVFRSNNATNASNKRSSNWKPPQAAIIPNLHLPMRSFEVKNRTSTEDIKCLRLITALKTPYLPDGRFDLEAYDDLVNKQIENGVEGIIVGGTTGEGQLMSWDEHIMLIGHTVNCFGSKIKVVGNTGSNSTREAIHASEQGFAVGMHAALHINPYYGKTSLDGMISHFESVISMGPTIIYNVPSRTGQDIPPHVIQTLAQSATLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVTSNLVPGLMRDIMFAGKNPTLNSKLLPLMDWLFQEPNPIGLNTALAQLGVVRPVFRLPYVPLPAEKRIEFVNLVKQIGREHFVGDKDVQVLDDDDFILVGRY* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2395 369 Hamap 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 68 343 IPR005263 GO:0008840|GO:0009089
Ahy12g2395 369 PRINTS Dihydrodipicolinate synthase signature 170 186 IPR002220 GO:0016829
Ahy12g2395 369 PRINTS Dihydrodipicolinate synthase signature 193 210 IPR002220 GO:0016829
Ahy12g2395 369 PRINTS Dihydrodipicolinate synthase signature 138 156 IPR002220 GO:0016829
Ahy12g2395 369 PRINTS Dihydrodipicolinate synthase signature 102 123 IPR002220 GO:0016829
Ahy12g2395 369 PANTHER DIHYDRODIPICOLINATE SYNTHASE-RELATED 4 369 - -
Ahy12g2395 369 ProSitePatterns Dihydrodipicolinate synthase signature 2. 198 228 IPR020625 GO:0016829
Ahy12g2395 369 CDD DHDPS 71 341 IPR005263 GO:0008840|GO:0009089
Ahy12g2395 369 Gene3D Aldolase class I 63 369 IPR013785 -
Ahy12g2395 369 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 72 341 IPR005263 GO:0008840|GO:0009089
Ahy12g2395 369 PANTHER DIHYDRODIPICOLINATE SYNTHASE 4 369 IPR002220 GO:0016829
Ahy12g2395 369 Pfam Dihydrodipicolinate synthetase family 70 343 IPR002220 GO:0016829
Ahy12g2395 369 SMART DHDPS_2 68 345 IPR002220 GO:0016829
Ahy12g2395 369 ProSitePatterns Dihydrodipicolinate synthase signature 1. 105 122 IPR020624 GO:0016829
Ahy12g2395 369 SUPERFAMILY Aldolase 72 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2395 Ahy-Chr12 112159810 112163023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2395 K01714 - gmx:100788930 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2395 12 112159810 112163023 Ahy2g2075 2 96066588 96069770 hybridization
Ahy14g2250 14 123464291 123467355 Ahy12g2395 12 112159810 112163023 PCT
Ahy4g1973 4 112098967 112101941 Ahy12g2395 12 112159810 112163023 PCT
Ahy12g2395 12 112159810 112163023 Ahy14g2250 14 123464291 123467355 PCT
Ahy12g2395 12 112159810 112163023 Ahy4g1973 4 112098967 112101941 PCT