Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0228 ATGGCGATGTTGAAGAGCTATAGTAGCAGTGCGTGCTTCAGAGGATTCGATTTCCCTGTTCATCGTTCCTATGCCAATAAAAGAAGCTCATACTGGAAGCCTCCACAAGCAGTTGTGATACCCAATCCCCACCTCCCAATGCGCAGTTTTGAGGTGAAAAATAGGACATCAACCGAGGACATAAAGTGTCTGAGATTAATAACTGCCATTAAAACTCCATACCTACCCGATGGCCGATTTGATCTTGAAGCTTATGACGCCTTGGTTAATACACAGATCGAACACGACATTGAAGGTATTATTGTTGGCGGCACAACTGGCGAAGGCCAGTTAATGACCTGGGATGAGCACATAATGCTTATTGGTCACACAGTCAATTGTTTCGGTGCGAAAATTAAGGTTGTTAGTAACACTGGAAGCAACTCCACAAGCGAAGCAATTCATGCTTCCGAGCAGGGTTTTGGTGTTGGAATGCATGCTGCCCTTCATATAAACCCTTACTACAGCAAAACCTCCCTGGATGGTTTGGTTTCTCACTTTGATGGTGTGCTTTCCATGGGACCTACTATCATATATAATGTACCTTCACGAACCGGTCAAGATATTCCTCCACATGTAATTCAAACCTTGGCTCATAATTCTAACTTGGCTGGTGTTAAGGAGTGTGTGGGAAATGACCGGATCAAACAATATAAGCGTTGTTAA 705 0.4369 MAMLKSYSSSACFRGFDFPVHRSYANKRSSYWKPPQAVVIPNPHLPMRSFEVKNRTSTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNTQIEHDIEGIIVGGTTGEGQLMTWDEHIMLIGHTVNCFGAKIKVVSNTGSNSTSEAIHASEQGFGVGMHAALHINPYYSKTSLDGLVSHFDGVLSMGPTIIYNVPSRTGQDIPPHVIQTLAHNSNLAGVKECVGNDRIKQYKRC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0228 234 Pfam Dihydrodipicolinate synthetase family 64 226 IPR002220 GO:0016829
Lal19g0228 234 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 15 232 - -
Lal19g0228 234 PANTHER DIHYDRODIPICOLINATE SYNTHASE 15 232 IPR002220 GO:0016829
Lal19g0228 234 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Lal19g0228 234 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Lal19g0228 234 SMART DHDPS_2 62 234 IPR002220 GO:0016829
Lal19g0228 234 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Lal19g0228 234 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Lal19g0228 234 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Lal19g0228 234 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Lal19g0228 234 SUPERFAMILY Aldolase 66 226 - -
Lal19g0228 234 Gene3D Aldolase class I 57 234 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0228 Lal-Chr19 2131794 2139588 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0228 K01714 - gmx:100788930 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0896 14 11362644 11365887 Lal19g0228 19 2131794 2139588 LSH
Lal1g2054 1 22706785 22710759 Lal19g0228 19 2131794 2139588 PCT
Lal19g0228 19 2131794 2139588 Lal1g2054 1 22706785 22710759 PCT