Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0120 Acco08g2016 Accr1g02478 . . . . . . Alju10g1991 Amo13g1537 . . . . Bisa02g2614 . Car06g03063 . Dere07g1913 . Enph8g1344 Glsi04g1954 . . . . . Lal2g0014 . . Lan8g1931 . . . Lele29g1359 Lele30g0194 Lele31g0216 Lele32g1196 Lja3g0118 Mal7g1251 . . Mibi07g1866 . . . Prci6g2544 . Pste1g00480 . . . Spst2g02921 . Sto4g2219 Tpr4g1243 . . . . Vimu5g02766 . Vivi5g01564 Vra2g0106
Pvu11g0121 . . Adu03g00957 . Aev04g3695 . Ahy13g1183 Aip03g01294 . Amo13g1527 . Apr5g0622 . . . . . . . . . . . . . . . . . Lan7g0016 . Lan13g0046 . Lasa7g00938 . . . . . Mal7g1243 . . . . . Phco9g00142 . Psa7g3600 Pste1g00475 . . . . . . Tpr4g1409 . . . . . . Vivi5g01562 Vra2g0107
Pvu11g0122 . . . . . . . . . Amo13g1223 . . Arst3g01239 Bach9g01181 . Bva07g01242 . . . Dod03g2550 . . . . . . Lal1g0036 . . . . . . . . . . . . Mal7g1240 . . . . . Phco9g00143 . . Pste1g00473 . . . Spst2g02920 . . . . Tsu06g00993 . . Vimu5g02764 . Vivi5g01557 Vra2g0108
Pvu11g0123 Acco08g2024 Accr1g02488 . . . . . . Alju10g1996 . . . . . Bisa02g2619 . . Cca04g00105 Dere07g1917 . Enph8g1340 Glsi04g1963 Gma12g00086 . Gso12g0078 . . . . . . . . . Lele29g1364 . Lele31g0212 . . . . . Mibi07g1870 . . Phco9g00144 . . . Pumo11g02226 Rops3g00131 Seca6g00200 Spst2g02916 Ssu3g3250 Sto4g2212 Tpr3g4570 . . . . Vimu5g02762 . . .
Pvu11g0124 . . . Aed5g0095 . . . . . . . . . . . . . . . . . . Gma12g00087 . Gso12g0079 . . . . . . . . . . . . . . . . . . . . Phco9g00145 . . Pste1g00462 . . . Spst2g02915 . . . . . . . . . . .
Pvu11g0125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g00146 . . . . . . . . . . . . . . . . . .
Pvu11g0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2587 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0118 Chr11 862860 868141 -
Pvu Pvu11g0119 Chr11 869861 878683 -
Pvu Pvu11g0120 Chr11 889927 895171 +
Acco Acco08g2016 Chr08 34500930 34505793 +
Accr Accr1g02478 Chr1 60632479 60632829 +
Alju Alju10g1991 Chr10 38973085 38977985 +
Amo Amo13g1537 Chr13 20853798 20857244 +
Bisa Bisa02g2614 Chr02 66242029 66245955 +
Car Car06g03063 Chr06 53493818 53501052 +
Dere Dere07g1913 Chr07 31939329 31943426 +
Enph Enph8g1344 Chr8 21890854 21895315 -
Glsi Glsi04g1954 Chr04 69313907 69320380 +
Lal Lal2g0014 Chr2 93394 97162 -
Lan Lan8g1931 Chr8 25344336 25347067 +
Lele Lele29g1359 Chr29 20266823 20272214 +
Lele Lele30g0194 Chr30 2054122 2059376 -
Lele Lele31g0216 Chr31 2176985 2182644 -
Lele Lele32g1196 Chr32 12673224 12677533 +
Lja Lja3g0118 Chr3 1263028 1266736 +
Mal Mal7g1251 Chr7 40559700 40566418 -
Mibi Mibi07g1866 Chr07 39183661 39189163 +
Prci Prci6g2544 Chr6 37066332 37071495 +
Pste Pste1g00480 Chr1 1565024 1569790 -
Spst Spst2g02921 Chr2 28960636 28972600 -
Sto Sto4g2219 Chr4 23640076 23643174 -
Tpr Tpr4g1243 Chr4 12005122 12009342 -
Vimu Vimu5g02766 Chr5 37231685 37235952 -
Vivi Vivi5g01564 Chr5 49352799 49357048 -
Vra Vra2g0106 Chr2 829792 834942 +
Pvu Pvu11g0121 Chr11 899692 904964 +
Adu Adu03g00957 Chr03 9809141 9812183 +
Aev Aev04g3695 Chr04 34409885 34412461 +
Ahy Ahy13g1183 Chr13 13590363 13592890 +
Aip Aip03g01294 Chr03 13116999 13128251 +
Amo Amo13g1527 Chr13 20778814 20782213 +
Apr Apr5g0622 Chr5 8564910 8570271 +
Lan Lan7g0016 Chr7 68904 72850 -
Lan Lan13g0046 Chr13 238709 242136 -
Lasa Lasa7g00938 Chr7 109153678 109157726 -
Mal Mal7g1243 Chr7 40180106 40184090 -
Phco Phco9g00142 Chr9 948255 952821 +
Psa Psa7g3600 Chr7 296783090 296785266 +
Pste Pste1g00475 Chr1 1553775 1558458 -
Tpr Tpr4g1409 Chr4 13753339 13757746 -
Vivi Vivi5g01562 Chr5 49243371 49247017 -
Vra Vra2g0107 Chr2 835937 840314 +
Pvu Pvu11g0122 Chr11 906333 909152 +
Amo Amo13g1223 Chr13 15981677 15988402 +
Arst Arst3g01239 Chr3 9907073 9908680 +
Bach Bach9g01181 Chr9 9309491 9312460 -
Bva Bva07g01242 Chr07 13350746 13354369 +
Dod Dod03g2550 Chr03 57030419 57034400 -
Lal Lal1g0036 Chr1 283568 289759 -
Mal Mal7g1240 Chr7 40138827 40143255 -
Phco Phco9g00143 Chr9 954421 956683 +
Pste Pste1g00473 Chr1 1546648 1552653 -
Spst Spst2g02920 Chr2 28955908 28959144 -
Tsu Tsu06g00993 Chr06 9033593 9037855 -
Vimu Vimu5g02764 Chr5 37222092 37224426 -
Vivi Vivi5g01557 Chr5 49159347 49162649 -
Vra Vra2g0108 Chr2 841685 844082 +
Pvu Pvu11g0123 Chr11 915192 918883 -
Acco Acco08g2024 Chr08 34631924 34637369 -
Accr Accr1g02488 Chr1 60720162 60724980 -
Alju Alju10g1996 Chr10 39063262 39068755 -
Bisa Bisa02g2619 Chr02 66362836 66369316 -
Cca Cca04g00105 Chr04 955808 960015 +
Dere Dere07g1917 Chr07 32065087 32070101 -
Enph Enph8g1340 Chr8 21800769 21807533 +
Glsi Glsi04g1963 Chr04 69509742 69516562 -
Gma Gma12g00086 Chr12 670111 675804 +
Gso Gso12g0078 Chr12 666308 672088 +
Lele Lele29g1364 Chr29 20374235 20380475 -
Lele Lele31g0212 Chr31 2091133 2096189 +
Mibi Mibi07g1870 Chr07 39288521 39294558 -
Phco Phco9g00144 Chr9 959821 963144 -
Pumo Pumo11g02226 Chr11 54766201 54769973 -
Rops Rops3g00131 Chr3 1786116 1791775 +
Seca Seca6g00200 Chr6 4885213 4889405 +
Spst Spst2g02916 Chr2 28923220 28932789 +
Ssu Ssu3g3250 Chr3 88873376 88878825 -
Sto Sto4g2212 Chr4 23546291 23560028 +
Tpr Tpr3g4570 Chr3 50801518 50808270 -
Vimu Vimu5g02762 Chr5 37204420 37208945 +
Pvu Pvu11g0124 Chr11 920170 924993 -
Aed Aed5g0095 Chr5 718444 722192 +
Gma Gma12g00087 Chr12 677967 681218 +
Gso Gso12g0079 Chr12 673611 677640 +
Phco Phco9g00145 Chr9 965427 968816 -
Pste Pste1g00462 Chr1 1521421 1527535 +
Spst Spst2g02915 Chr2 28914538 28917009 +
Pvu Pvu11g0125 Chr11 926612 941677 +
Phco Phco9g00146 Chr9 969904 985429 +
Pvu Pvu11g0126 Chr11 942998 948086 -
Pvu Pvu11g0127 Chr11 954067 955198 -
Amo Amo13g1223 Chr13 15981677 15988402 +
Tpr Tpr4g1409 Chr4 13753339 13757746 -