Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0120 ATGGCTTCATGTACTACTCCTCCTTCCCTTATGCTCGCTCACCCTCAAGATCTTTCTTCTTCTCTTCGCTTCTTCTCTCACTCTCACAGTCCTCTTTCCAGAACCTTCTCTTTCTGTCCCCTCGTCTTGAAGCCCTCTTCCAAGTGGGTCCACTTCACCTTCCAAAGGGACCCCAAATCCAGGACCAGCCATGCCCTCGTCGCTGCTCTGGCTGCCGAGGTTGAGCTGCCTGAAACTGTCGACGACACGGCGGAGGGAGTGGAGGAGTCCGGCCCCGTCGACACTCTCACCACCGCCAAGCCTAAGAAAGGCAAGGCTGCATTGCCTCTCAAGAGGGACAGGACAAGGTCTAAGAGGTTCTTGGAAATTCAAAAATTGAGGGAGCGTAAGAAAGAATATGACTTGAAGACAGCAGTATCTTTGGTTAAAGAAACGGGTAAAACCAAGTTTGTTGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCCAAATATAACGATCAACAGTTAAGAGCAACTGTAAATCTGCCTAAGGGAACTGGAAAACCGGTTAAAGTGGCTGTTCTCACTCAAGGTGAAAAATTCGATGAAGCAAAAAATGCAGGAGCTGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTCATGGAGTTTGATAAACTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTGGGGCCAAGAGGACTGATGCCAAACCCAAAAGCTGGCACTGTAACAACTAATATTCCTGAGGCTATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGGGCAGACAAAACTGGAATCGTGCACTTACCTTTTGGAAAAGTTGACTTTACAGAAGAGGATCTTCTTGTAAACTTGCTTGCTGCTGTGAAATCAGTAGAAGCAAACAAACCTTCAGGTGCCAAAGGTGTGTACTGGAAAAGTGCCCACATATGCTCATCCATGGGGCCTTCAATCAGGTTAAACATCAGGGAGATGCTTGATTACAGACCTCCATCAGAATAG 1050 0.4667 MASCTTPPSLMLAHPQDLSSSLRFFSHSHSPLSRTFSFCPLVLKPSSKWVHFTFQRDPKSRTSHALVAALAAEVELPETVDDTAEGVEESGPVDTLTTAKPKKGKAALPLKRDRTRSKRFLEIQKLRERKKEYDLKTAVSLVKETGKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTTNIPEAIAEFKQGKVEYRADKTGIVHLPFGKVDFTEEDLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDYRPPSE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0120 349 Pfam Ribosomal protein L1p/L10e family 143 332 IPR028364 -
Pvu11g0120 349 ProSitePatterns Ribosomal protein L1 signature. 233 251 IPR023673 -
Pvu11g0120 349 Gene3D - 180 271 IPR016095 -
Pvu11g0120 349 Gene3D - 133 336 - -
Pvu11g0120 349 Hamap 50S ribosomal protein L1 [rplA]. 111 341 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Pvu11g0120 349 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE 130 341 - -
Pvu11g0120 349 CDD Ribosomal_L1 135 336 IPR028364 -
Pvu11g0120 349 MobiDBLite consensus disorder prediction 82 106 - -
Pvu11g0120 349 TIGRFAM rplA_bact: ribosomal protein uL1 116 340 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Pvu11g0120 349 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 130 341 - -
Pvu11g0120 349 SUPERFAMILY Ribosomal protein L1 119 338 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0120 Pvu-Chr11 889927 895171 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0120 K02863 - gmx:100808549 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0120 11 889927 895171 Pvu11g0120 11 889927 895171 ECH