Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02764 ATGGCAAATGCTTTGAGAGTTGGTTGTGTTATCTCTCTCTGCTCCTTACGGAATACCACATCCTATCTTCCCCTTCTCTCCAACGCCACGCGCTTCCGTTCCAAGTTCCCCTTTTTCACCCTCTCATCGTCGCAAAACTCATTTGGGTCTCCTTCATTTCGAACACTCTCTTCTTCTTCCATTGATGAGGCAGTAACCACCGAAGCCATCACGGGGAATGCAAGTGGCGAAGCTGAGAGCAGTATAAGGGACTCCGCTGGGCTGCTTGACATAAGGGTTGGACGCATTCTGAGGGCATGGAAACACGATGAAGCTGATTCTCTGTATGTTGAAGAGGTTGATATCGGTGAGCCTGAACCCAGAATCATATGCAGTGGCCTTGTCAAGTACATCCCTATTGAACACCTTCAGGGCAAAAAGGTTATTGTCCTTTCCAACCTGAAGCCAAGAAATATGCGTGGTGTCAAGTCCTGCGGAATGCTGATGGCGGCTTCTGATGCAAAGCATGAGAATGTTGAACTTCTGTTCCCTCCTGAGGAAGCAGCTCCTGGTGAAAGAATATGGTTTGGAACAGAAGATGAAAAAGATAATCAACCTGCTGCTGCCACTCCGAATCAGATACAAAAGAAAAAGATATGGGAATTGGTGCAACCTCATCTTAGGACAGATGTTTCTTGCATTGCGATGCTAGGGGAGCATGTCATGCGTACATCTGTAGGTTCAGTAGCATGCCAGTCCTTGCAGAATGCAAATATCTCCTGA 762 0.4711 MANALRVGCVISLCSLRNTTSYLPLLSNATRFRSKFPFFTLSSSQNSFGSPSFRTLSSSSIDEAVTTEAITGNASGEAESSIRDSAGLLDIRVGRILRAWKHDEADSLYVEEVDIGEPEPRIICSGLVKYIPIEHLQGKKVIVLSNLKPRNMRGVKSCGMLMAASDAKHENVELLFPPEEAAPGERIWFGTEDEKDNQPAAATPNQIQKKKIWELVQPHLRTDVSCIAMLGEHVMRTSVGSVACQSLQNANIS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02764 253 CDD tRNA_bind_EMAP-II_like 84 188 - -
Vimu5g02764 253 Pfam Putative tRNA binding domain 91 186 IPR002547 GO:0000049
Vimu5g02764 253 SUPERFAMILY Nucleic acid-binding proteins 85 252 IPR012340 -
Vimu5g02764 253 Gene3D - 85 253 IPR012340 -
Vimu5g02764 253 ProSiteProfiles tRNA-binding domain profile. 85 188 IPR002547 GO:0000049
Vimu5g02764 253 FunFam tyrosine--tRNA ligase, cytoplasmic 85 253 - -
Vimu5g02764 253 PANTHER TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER 77 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02764 Vimu-Chr5 37222092 37224426 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02764 - - var:108338794 494.582