Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02762 ATGAATTTGACACCAGGTGTCGGCAAAGGAAAGACTGCCAAATCCCAAGTTCTGTCTACTGTTGAGAAGTACGAGAAATATCATGCTTGTCATGGAGGTGACGAGGAAGAGAGAAAAGCCAATTATGCTGATATGGTTAACAAATACTATGATCTTGCTACCAGCTTTTATGAGTTTAGTTGGGGTCAATCTTTCCACTTTGCACCTAGATGCAAAGGGGAATCTCTTACAGAAAGCTTGAAAAGGCATGAACACTTCCTTGCTTTGCAGCTTGGCCTAAAGGCTGGACAAAAGGTTTTGGATATTGGATGTGGAATTGGAGGGCCACTCAGAGAAATCTCTCGATTCAGCTCAACATCAATCACGGGATTGAATAATAATGCTTATCAGATAAAAAGAGCTAAGGAACTCACTTGTGATACTGGTTTGGAGAAGACTTGCAACTTTGTGGAGGGTGACTTCATGAAAATGCCTTTCTCAGACAATTACTTTGATGCAACCTATGCAATCGAATCCACTTGCCATGCACCAGATGCTCATGCTTGCTACAAAGAGATCTTTAGAGTGTTGAAGCCTGGTGGATGGTTTGTTGCATGTGAGTGGTGCATGACTGAAGTTTTTGATCCCTGCAACAAAGAACACCAGAAGATAAAGGAAGAAATTGAGGTTGGTGATGGACTTCCTGACATTAGATCGACCACAAAGTGTCTTGAAGCTCTTAAACAAGCAGGCTTTGAGGTGATGGAAGAGAAAGATCTTACAATTGAATCCCCTGTTCCTTGGTACCTTCCTCTTGATCCACCAAGTCATTTCTCATTCAGTAACTTTCGTGCGACATCTGCTGGAAGATTTGTGACAAGGATCATGGTGAGGGCTCTAGAATTTCTTGGACTGGCTCCAAAAGGAAGTACAAGGGTTGAGGGATTCCTACGAAAGGCAGCAGAAGGACTAGTTGCTGGTGGAAAGTAA 969 0.4272 MNLTPGVGKGKTAKSQVLSTVEKYEKYHACHGGDEEERKANYADMVNKYYDLATSFYEFSWGQSFHFAPRCKGESLTESLKRHEHFLALQLGLKAGQKVLDIGCGIGGPLREISRFSSTSITGLNNNAYQIKRAKELTCDTGLEKTCNFVEGDFMKMPFSDNYFDATYAIESTCHAPDAHACYKEIFRVLKPGGWFVACEWCMTEVFDPCNKEHQKIKEEIEVGDGLPDIRSTTKCLEALKQAGFEVMEEKDLTIESPVPWYLPLDPPSHFSFSNFRATSAGRFVTRIMVRALEFLGLAPKGSTRVEGFLRKAAEGLVAGGK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02762 322 FunFam Methyltransferase 20 272 - -
Vimu5g02762 322 CDD AdoMet_MTases 98 199 - -
Vimu5g02762 322 PANTHER ZGC:194242 9 322 - -
Vimu5g02762 322 Gene3D Vaccinia Virus protein VP39 19 265 IPR029063 -
Vimu5g02762 322 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 40 265 IPR029063 -
Vimu5g02762 322 Pfam Methyltransferase domain 100 197 IPR013216 GO:0008168
Vimu5g02762 322 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 49 322 IPR030384 GO:0008168
Vimu5g02762 322 Pfam Sterol methyltransferase C-terminal 273 322 IPR013705 GO:0006694|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02762 Vimu-Chr5 37204420 37208945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02762 84 254 Acyl Lipid Metabolism Gene Families AT1G48600 30.814 5.21e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02762 K00559 - cit:102628258 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02762 5 37204420 37208945 Vimu4g02079 4 23087575 23094767 PCT