Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g1275 . . . . . . . . Pste1g00504 . . . Spst2g02927 . . . . . . . Vimu5g02772 . Vivi5g01573 Vra2g0100
Pvu11g0109 Acco08g2003 . . . . . . . Alju10g1982 Amo13g1094 . . . . Bisa02g2608 . . . Dere07g1906 . Enph8g1347 . . . . . . . . Lan7g0014 . . . . . . . . . Mal7g1265 . . Mibi07g1860 . Phac11g00134 . . Psa7g4531 Pste1g00498 . . . Spst2g02926 . Sto4g2238 Tpr3g2554 . . . . Vimu5g02770 . . Vra2g0101
Pvu11g0110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g1264 . . . . . . . . Pste1g00497 . . . Spst2g02925 . . . . . . . Vimu5g02768 . Vivi5g01568 Vra2g0102
Pvu11g0111 . . . . . . . . . . . . . . Bisa02g2613 . . . Dere07g1912 . . Glsi04g1953 . . . . . . . . . . . . . Lele30g0201 . . . Mal7g1263 . . . . . . . . Pste1g00494 . . . Spst2g02924 . Sto4g2221 . . . . . . . Vivi5g01567 Vra2g0103
Pvu11g0112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g0116 Mal7g1260 . . . . . . . . . . . . . . . . . . . . . . . Vra2g0104
Pvu11g0113 . . . . . . . . . Amo13g1253 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g0117 Mal7g1254 . . . . . . . . Pste1g00491 . . . Spst2g02922 . . . . . . . Vimu5g02767 . Vivi5g01565 Vra2g0105
Pvu11g0114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0108 Chr11 800092 804291 +
Mal Mal7g1275 Chr7 41361430 41365651 -
Pste Pste1g00504 Chr1 1618085 1621019 -
Spst Spst2g02927 Chr2 29016844 29020061 -
Vimu Vimu5g02772 Chr5 37267618 37268635 -
Vivi Vivi5g01573 Chr5 49758557 49761857 -
Vra Vra2g0100 Chr2 797265 801074 +
Pvu Pvu11g0109 Chr11 809821 816500 +
Acco Acco08g2003 Chr08 34279705 34285456 +
Alju Alju10g1982 Chr10 38819405 38825363 +
Amo Amo13g1094 Chr13 13873433 13887206 +
Bisa Bisa02g2608 Chr02 66096157 66103428 +
Dere Dere07g1906 Chr07 31826967 31833390 +
Enph Enph8g1347 Chr8 21934744 21939382 -
Lan Lan7g0014 Chr7 63763 82360 -
Mal Mal7g1265 Chr7 40966921 40973235 -
Mibi Mibi07g1860 Chr07 39087802 39096028 +
Phac Phac11g00134 Chr11 888572 895347 +
Psa Psa7g4531 Chr7 376178030 376181360 -
Pste Pste1g00498 Chr1 1607776 1612291 -
Spst Spst2g02926 Chr2 29007830 29012132 -
Sto Sto4g2238 Chr4 23766282 23776082 -
Tpr Tpr3g2554 Chr3 24706273 24713484 +
Vimu Vimu5g02770 Chr5 37260645 37261043 -
Vra Vra2g0101 Chr2 804283 811027 +
Pvu Pvu11g0110 Chr11 816956 822085 -
Mal Mal7g1264 Chr7 40961555 40966230 +
Pste Pste1g00497 Chr1 1602062 1606949 +
Spst Spst2g02925 Chr2 29002392 29006921 +
Vimu Vimu5g02768 Chr5 37248714 37253753 +
Vivi Vivi5g01568 Chr5 49569541 49574042 +
Vra Vra2g0102 Chr2 811428 816596 -
Pvu Pvu11g0111 Chr11 824379 825553 -
Bisa Bisa02g2613 Chr02 66218570 66219839 -
Dere Dere07g1912 Chr07 31927424 31928918 -
Glsi Glsi04g1953 Chr04 69303473 69304656 -
Lele Lele30g0201 Chr30 2367488 2378258 -
Mal Mal7g1263 Chr7 40953993 40958029 +
Pste Pste1g00494 Chr1 1598145 1598769 +
Spst Spst2g02924 Chr2 29000139 29000835 +
Sto Sto4g2221 Chr4 23651744 23653153 +
Vivi Vivi5g01567 Chr5 49544196 49545741 +
Vra Vra2g0103 Chr2 817937 819037 -
Pvu Pvu11g0112 Chr11 838715 840448 -
Lja Lja3g0116 Chr3 1254889 1256668 -
Mal Mal7g1260 Chr7 40925310 40927043 +
Vra Vra2g0104 Chr2 820197 822069 -
Pvu Pvu11g0113 Chr11 841285 844532 -
Amo Amo13g1253 Chr13 16328714 16332244 +
Lja Lja3g0117 Chr3 1256950 1260452 -
Mal Mal7g1254 Chr7 40639249 40645433 +
Pste Pste1g00491 Chr1 1588759 1592264 +
Spst Spst2g02922 Chr2 28984866 28987876 +
Vimu Vimu5g02767 Chr5 37238730 37245669 +
Vivi Vivi5g01565 Chr5 49415976 49419278 +
Vra Vra2g0105 Chr2 822713 826605 -
Pvu Pvu11g0114 Chr11 847370 847425 -
Pvu Pvu11g0115 Chr11 848306 849230 -
Pvu Pvu11g0116 Chr11 853285 854529 -
Pvu Pvu11g0117 Chr11 858793 861093 +
Amo Amo13g1253 Chr13 16328714 16332244 +
Amo Amo13g1094 Chr13 13873433 13887206 +
Tpr Tpr3g2554 Chr3 24706273 24713484 +