Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00105 ATGAATCTGGCATCAGGTGTTGGTGGAAAGATTGACAAATCTCAAATTTTGTCCGCCGTTGAAGAGTATGAGAAGTATCATGTTTATTACGGAGGCCAAGAGGAAGAGAGAAAAGCTAATTACACTGATATGGTTAATAAATACTATGATCTTTCAACCAGCTTTTATGAGTATGGTTGGGGTCAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTCAGGAAAGCCTTAAAAGACATGAGCACTTTCTTGCTTTACAACTTGGCCTAAAGCCAGGACAAAAGGTTTTGGATGTTGGATGTGGAATTGGGGGGCCACTAAGAGAAATTTCTCGATTCAGCTCAACATCAATTACAGGATTGAACAATAATGAGTACCAGATAACAAGAGCAAAGGAACTCAATCGCATTACTGGAGTGGACAAAACTTGCCACTTGGTCAAGgccgatttcatgaaaatgccattctcagataatagttttgatgcagtgtatgcaattgaagccacctgtcatgcaccagatgctTATGGATGctacaaagagatcttcagggtgttgaagcctggtcaatattttgctgcatatgaatggtgcatgactagagcttttgatcccaacaaTAAAGATCACCAAAGGATAAAGGCAGAAATTGAGATTGGTGATGGACTTCCTGATATTAGATTGACCTCAAAGTGTGCAGAAGCTCTGAATCAAGCAGGTTTTGAGGTACTATGGGAGAAAGATCTTGCAATTGATTCTCCTGTTCCTTGGTATGATCCTTTGGATACAAGTCGCTTTTCACTTAATACATTTCGTCTGACAGCTCTTGGACGATTTTTTACAAGAAGTCTGGTAAAAAGTCTAGAATTTGTTGGACTGGCTCCAAGAGGAAGTCTAAGGGTTCAAGAATTCCTAGAAAAGGCCGGAGATGGACTAGTTGAAGGGGGAAAGAAAGAAATTTTCACACCAATGTACTTCTTTTTGGCTCGAAAGCCCGATTATAACATTTAA 1020 0.3314 MNLASGVGGKIDKSQILSAVEEYEKYHVYYGGQEEERKANYTDMVNKYYDLSTSFYEYGWGQSFHFAPRWKGESLQESLKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSITGLNNNEYQITRAKELNRITGVDKTCHLVKADFMKMPFSDNSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQYFAAYEWCMTRAFDPNNKDHQRIKAEIEIGDGLPDIRLTSKCAEALNQAGFEVLWEKDLAIDSPVPWYDPLDTSRFSLNTFRLTALGRFFTRSLVKSLEFVGLAPRGSLRVQEFLEKAGDGLVEGGKKEIFTPMYFFLARKPDYNI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00105 339 Pfam Sterol methyltransferase C-terminal 272 335 IPR013705 GO:0006694|GO:0008168
Cca04g00105 339 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 48 335 IPR030384 GO:0008168
Cca04g00105 339 PANTHER CYCLOARTENOL-C-24-METHYLTRANSFERASE 1 336 - -
Cca04g00105 339 CDD AdoMet_MTases 97 192 - -
Cca04g00105 339 Pfam Methyltransferase domain 99 196 IPR013216 GO:0008168
Cca04g00105 339 Gene3D Vaccinia Virus protein VP39 19 268 IPR029063 -
Cca04g00105 339 PANTHER ZGC:194242 1 336 - -
Cca04g00105 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 335 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00105 Cca-Chr4 955808 960015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00105 83 251 Acyl Lipid Metabolism Gene Families AT1G48600 30.769 7.57e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00105 K00559 - gmx:100818061 635.95