Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g1223 | ATGATACAGGGATTTTCAGCGTGCAAGCTTACTGTAACGTCACACACCCTAGCTGCTTCTCTTCACTCACTTTCTCTCTCATCTCTCACTCTCTCTCCTTCTCTGTCGCGCTTCTTCTGGCGGCGGAGCTGCTCAATTTCTCCGGCGGCGGCGTCACATTTACGATTCCAGTCACCTGAAATGGCGGCGAACGATCGGAAAACGCCGAAGCTTCCCGTGAAAGGCAAACGCAACATCCTCATCACAAGCGCCTTGCCTTACGTCAACAACGTCCCTCACCTTGGCAACATCATTGGATGTGTCTTGAGTGCTGACGTGTATGCTCGGTACTGTCGCCTCCGCGGTTACAATGCTATTTACATTTGCGGTACCGATGAGTATGGCACTGCAACAGAGACTAAAGCTATGGAGGAGAATTGCTCTCCCAAGGAGATTTGTGACAAGTACCATGCAATTCATAAGGATATCTATGAATGGTTTGATATAAGTTTTGATGAATTTGGGCGGACTTCAGCCCCACAGCAGACTGAAGTTTGCCAAGCAATTTTTAAAAGATTGTTGGACAACAAATGGCTCTCAGAGAACACAATGCAGCAGCTTTACTGTGACACATGCAAAAGGTTCCTAGCTGATAGGCTTGTGGAGGGTATATGCCCAACTCCAGGGTGTGAGTATGACTCTGCACGAGGAGATCAATGTGAGAAGTGCGGGAAGCTTCTAAATCCAACAGAATTGAAAACTCCCAGGTGTAAGGTTTGTCAAAATACTCCACGAATTCGTGATACAGATCACTTGTTTCTTGAACTTCCCCTGTTGAGAGAGAAATTGGAAAAATACATAGAGGAGGTGAAAGGGTCATGGAGTTCAAATGCTAAGCAAACAACAGCTTCATGGCTTAGAGAAGGATTAAAGCCACGTTGTATTACCAGGGATCTGAAATGGGGGGTTCCCGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATTGGGTATGTCTCAATCACTGCATGCTACACAACTGAATGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGTTGTATCAATTTATGGGCAAGGACAATGTGCCTTTCCACACTGTGATGTTTCCATCTACTCTTCTTGGAACTGGTGAAAATTGGACCTTGATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAAAGCAAAGGCATAGGAGTATTTGGTAATGATGCAAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTACTCACAAATAGGCCTGAGGTATCTGATACATTATTTACATGGCCTGATTTGCAAGCAAAATTAAATAGTGAGCTGCTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGCTTTATTGCCAAACCTGAAGGTCAAGGATATGATTCTGCTATACCTGCTCTTGCTGATGGTCTAAGTAGTGAATCCCATGATCCTACCAAAAAATTGGCTGAAAGGATTTCTGCATACGTGGACCAGTACATAGAGGAAATGGAGAAGGTTAGACTGAAACAAGGATTGAAAATCGCAATGGCCATATCCACCGAGGGGAATGGATATCTGCAGGAATGTGAATTTTGGCGCCTTTACAAGGAAAACAAACCTCTTTGTTCTCTTGTTATGAAAACTGCGGTTGGGGTTGTATATATTCTTGCATGTTTATTGGAACCCTTTATGCCGTCATTAACACAGGAGGTATTTAAGCAGCTAAATTTGTCTACGGAATTGCATCTTTCGCTTTGTGACGAAAAAGGAGATGTTAACAAGGCAAAGATACCTTGGGAGATCCTAAATGCTGGCCATAAAATTGGGAAACCACAGCCACTGTTCAAGGAACTGAAAGATGAAGACGTAGAGTTCTACAGGAAGAAATTTGCGGGAAGTCAAGCTGATAGGATCTTGCGTGCAGAGGCTGAAGCTGGAAAAGTCGCCGAGGAACTGAAGAAGACAAAAATTTCAGATGGTGGAAAGAAAAAATCATCCTCAAAGTCATCAAATGATGGCAAAAACAAAGCTGCTCCTGAGCCAGAAATTACCATCAGCAGGCTTGATATACGTGTTGGCCTTATTAAGAAAGCTCAAAAACATCCCGATGCTGATTCACTATACGTGGAAGAGATTGATGTTGGCGAAGAACAGCCCAGAACAGTTGTTAGTGGGCTTGTCAAGTATATACCACTTGAAGAAATGCAGAATCGAAAGGTCTGTGTTCTCTGCAACCTAAAGCCAGCAACAATGAGGGGAATTAAATCCCAAGCAATGGTTCTAGCTGCTTCGAATAGTGATCACACCAAGGTGGAGTTGGTTGAGCCACCCAGTTCAGCAAAAGTTGGAGAAAGAGTCACATTCCCAGGGTTTGAAGGTAATCCTGATGAACTCTTGAACCCAAAGAAGAAAGTCTGGGAAACATTGCAAGTGGATCTGCAAAGTAATGGGGAACTAGTGGCATGCTACAAGGATGTTCCACTCACCACATCAGCTGGTGTTTGCAAGGTCTCATCCATACAAAATGGATCAATTAGGTAG | 2589 | 0.4311 | MIQGFSACKLTVTSHTLAASLHSLSLSSLTLSPSLSRFFWRRSCSISPAAASHLRFQSPEMAANDRKTPKLPVKGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKDIYEWFDISFDEFGRTSAPQQTEVCQAIFKRLLDNKWLSENTMQQLYCDTCKRFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKTPRCKVCQNTPRIRDTDHLFLELPLLREKLEKYIEEVKGSWSSNAKQTTASWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITACYTTEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPEGQGYDSAIPALADGLSSESHDPTKKLAERISAYVDQYIEEMEKVRLKQGLKIAMAISTEGNGYLQECEFWRLYKENKPLCSLVMKTAVGVVYILACLLEPFMPSLTQEVFKQLNLSTELHLSLCDEKGDVNKAKIPWEILNAGHKIGKPQPLFKELKDEDVEFYRKKFAGSQADRILRAEAEAGKVAEELKKTKISDGGKKKSSSKSSNDGKNKAAPEPEITISRLDIRVGLIKKAQKHPDADSLYVEEIDVGEEQPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSDHTKVELVEPPSSAKVGERVTFPGFEGNPDELLNPKKKVWETLQVDLQSNGELVACYKDVPLTTSAGVCKVSSIQNGSIR* | 863 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g1223 | 862 | Pfam | Anticodon binding domain of methionyl tRNA ligase | 499 | 650 | IPR041872 | - | |
| Amo13g1223 | 862 | CDD | Anticodon_Ia_Met | 455 | 591 | IPR041872 | - | |
| Amo13g1223 | 862 | SUPERFAMILY | Methionyl-tRNA synthetase (MetRS), Zn-domain | 214 | 250 | IPR029038 | - | |
| Amo13g1223 | 862 | MobiDBLite | consensus disorder prediction | 669 | 686 | - | - | |
| Amo13g1223 | 862 | TIGRFAM | metG: methionine--tRNA ligase | 79 | 615 | IPR014758 | GO:0000166|GO:0004825|GO:0005524|GO:0006431 | |
| Amo13g1223 | 862 | Gene3D | - | 699 | 862 | IPR012340 | - | |
| Amo13g1223 | 862 | CDD | tRNA_bind_EMAP-II_like | 699 | 803 | - | - | |
| Amo13g1223 | 862 | SUPERFAMILY | Nucleic acid-binding proteins | 701 | 861 | IPR012340 | - | |
| Amo13g1223 | 862 | PANTHER | METHIONINE--TRNA LIGASE | 65 | 862 | IPR023458 | GO:0004825 | |
| Amo13g1223 | 862 | Pfam | tRNA synthetases class I (M) | 79 | 471 | IPR015413 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Amo13g1223 | 862 | ProSitePatterns | Aminoacyl-transfer RNA synthetases class-I signature. | 86 | 97 | IPR001412 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Amo13g1223 | 862 | Gene3D | HUPs | 78 | 459 | IPR014729 | - | |
| Amo13g1223 | 862 | MobiDBLite | consensus disorder prediction | 669 | 698 | - | - | |
| Amo13g1223 | 862 | SUPERFAMILY | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 463 | 647 | IPR009080 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Amo13g1223 | 862 | Gene3D | - | 214 | 250 | IPR029038 | - | |
| Amo13g1223 | 862 | PANTHER | METHIONINE--TRNA LIGASE CYTOPLASMIC | 65 | 862 | - | - | |
| Amo13g1223 | 862 | CDD | MetRS_core | 78 | 446 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | Pfam | Putative tRNA binding domain | 706 | 801 | IPR002547 | GO:0000049 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 81 | 94 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 114 | 128 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 162 | 173 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 328 | 339 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 363 | 378 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | PRINTS | Methionyl-tRNA synthetase signature | 458 | 469 | IPR033911 | GO:0004825|GO:0006431 | |
| Amo13g1223 | 862 | SUPERFAMILY | Nucleotidylyl transferase | 76 | 458 | - | - | |
| Amo13g1223 | 862 | Gene3D | - | 460 | 633 | - | - | |
| Amo13g1223 | 862 | Hamap | Methionine--tRNA ligase [metG]. | 77 | 645 | IPR023458 | GO:0004825 | |
| Amo13g1223 | 862 | ProSiteProfiles | tRNA-binding domain profile. | 700 | 803 | IPR002547 | GO:0000049 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g1223 | Amo-Chr13 | 15981677 | 15988402 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g1223 | K01874 | - | gmx:100809861 | 1404.42 |