Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01557 ATGGCAAACATTTTGAAGGGTGGCACTGTTATCCTCTCATTCTTCTCTTCACGAACCACCACACTCTCCCGACCATCAACAACAACAACAACCCATTGCTCATTTCGTTCCAAGTTCCCTTTTCTCTCACTCTCTTCTACCTCACGCCCTAGACCCCTAACTGGATTTCCTTCCTTTTGCACTGTTGCCTCCGAGCCAGTCCCGGAAGCCGTAGCCGCTGAAACCAATAGCAATAATGAAAATGATAAGAGTGTTAGAGATTCTGCCGGGTTGCTTGACATAAGAGTCGGTTGCATTCTCAGGGCATGGAAACATGATGAAGCTGAAACTCTTTATGTCGAGGAAGTTGATATTGGTGAGCCTGAACCTAGAATCATTTGCAGTGGCCTTGTCAATTATATCCCTCTTGAACACCTTCAGGGAAAAAAAGTTATTGTTCTTTCGAATCTGAAGCCAAGGAATATGCGTGGTGTCAAGTCAAGTGGAATGTTGATGGCTGCTTCTGATTCAAAGCATGAGAATGTTGAACTTCTGTTCCCTCCCGAGGAAGCAAATCCCGGTGAAAGAATCTGGTTTGGATCTGAAGATGAAAAGGACAATCAACCTGAAGCTGCCAAACCGAATCAGATACAAAAGAAAAAGATATGGGAATTAGTACAGCCTCATCTTAAGACAGATGCTTCTTGTACGGCGATGCTAGGTGAGCATGTAATGCGTACATCTGTAGGCGCAGTGGCATGCCAGTCTTTGCAGAATGCAAATATCTCCTGA 771 0.4462 MANILKGGTVILSFFSSRTTTLSRPSTTTTTHCSFRSKFPFLSLSSTSRPRPLTGFPSFCTVASEPVPEAVAAETNSNNENDKSVRDSAGLLDIRVGCILRAWKHDEAETLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKPRNMRGVKSSGMLMAASDSKHENVELLFPPEEANPGERIWFGSEDEKDNQPEAAKPNQIQKKKIWELVQPHLKTDASCTAMLGEHVMRTSVGAVACQSLQNANIS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01557 256 Pfam Putative tRNA binding domain 94 189 IPR002547 GO:0000049
Vivi5g01557 256 SUPERFAMILY Nucleic acid-binding proteins 88 255 IPR012340 -
Vivi5g01557 256 PANTHER TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER 77 255 - -
Vivi5g01557 256 CDD tRNA_bind_EMAP-II_like 87 191 - -
Vivi5g01557 256 FunFam tyrosine--tRNA ligase, cytoplasmic 88 256 - -
Vivi5g01557 256 ProSiteProfiles tRNA-binding domain profile. 88 191 IPR002547 GO:0000049
Vivi5g01557 256 Gene3D - 88 256 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01557 Vivi-Chr5 49159347 49162649 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01557 - - gmx:100810696 345.125