Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02766 ATGGCTTCGTGTACAACACCACCTTCGCTTATGCTGGCTCATCCACAAGACCTATCTTCTTCTCTTCGCTTCTTCTCTCACAGTCAGAGACCTCTTTCTAGAACATTCTCGTTTTGTCCTCTCGTATTGAAGTCCTCTTCCAAGTGGGTCAGGTTCAGTTTCCGAGCAGAGCCCAAATCCAGGACTAGCCATGCAGTTGTCGCCGCTTTGGCTGCCGAAGTTGAACTGGCTGAAACGGTCGACGACACGGCGGATGGAGTCGATGGGTCCGCCCCCACCGACGCTGTCGCCACCGTCAAGCCTAAGAAAGGCAAGGCTGCATTGCCTCTCAAGAGGGACAGGGATGGCTTTTGCTTGTTTGGTCTCCTTCTTCCCATTTATTTGCATCATGATCTAATTGTTCTTCTACCGTGTCACCAGTCAAGGTCTAAGAGGTTCTTGGAAATTCAACAATTGAGGGAACGTAAGAAAGAGTATGACTTGAAGACAGCAATATCTTTGGTTAAAGAAACAGCTAAAACCAAGTTTGTTGAGACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAACGACCAACAGCTAAGAGCAACAGTAAATCTGCCCAAGGGAACTGGAAAACCGGTTAAAGTGGCTGTTCTCACTCAAGGTTTTGGTATGGAGGCCAAATCATTAAGGGATTGGGAGGTTTGGGGTGCTCTCCTTGCCCTGAAAATCTGTTATGATATTGGATTGATATTTGTGGCTTGTGAAAAATTCGATGAGGCAAAAAATGCAGGAGCTGATTTGGTGGGTGGAGAGGACCTTATAGAACAGATAAAAGGAGGATTCATGGAGTTTGATAAACTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGGAAGATTCTGGGGCCAAGAGGACTGATGCCAAACCCAAAAGCTGGCACTGTAACACCTAATATTCCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGGGCAGATAAAACTGGAATCGTGCACTTACCTTTTGGAAAAGCTGACTTTACAGAGGAGGATCTTCTTGTAAACTTGCTTGCTGCTGTGAAATCAGTAGAGGCAAACAAACCTTCAGGTGCTAAAGGTGTGTACTGGAAAAGTGCCCACATATGCTCATCCATGGGACCTTCAATCAAGTTAAATATTAGGGAGATGCTTGATTACAGACCTCCATCAGAATAG 1227 0.454 MASCTTPPSLMLAHPQDLSSSLRFFSHSQRPLSRTFSFCPLVLKSSSKWVRFSFRAEPKSRTSHAVVAALAAEVELAETVDDTADGVDGSAPTDAVATVKPKKGKAALPLKRDRDGFCLFGLLLPIYLHHDLIVLLPCHQSRSKRFLEIQQLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGFGMEAKSLRDWEVWGALLALKICYDIGLIFVACEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFTEEDLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIKLNIREMLDYRPPSE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02766 408 Gene3D - 247 327 IPR016095 -
Vimu5g02766 408 Gene3D - 328 404 - -
Vimu5g02766 408 Hamap 50S ribosomal protein L1 [rplA]. 139 400 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vimu5g02766 408 Pfam Ribosomal protein L1p/L10e family 169 391 IPR028364 -
Vimu5g02766 408 Gene3D - 157 246 - -
Vimu5g02766 408 CDD Ribosomal_L1 161 395 IPR028364 -
Vimu5g02766 408 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 248 405 - -
Vimu5g02766 408 ProSitePatterns Ribosomal protein L1 signature. 292 310 IPR023673 -
Vimu5g02766 408 SUPERFAMILY Ribosomal protein L1 154 396 IPR023674 -
Vimu5g02766 408 FunFam 50S ribosomal protein L1 245 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02766 Vimu-Chr5 37231685 37235952 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02766 K02863 - gmx:100808549 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02766 5 37231685 37235952 Vimu5g02766 5 37231685 37235952 ECH