Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0106 ATGGCTTCGTGTACAACACCACCTTCGCTTATGCTGGCTCATCCACAAGACCTATCTTCTTCTCTTCGCTTCTTCTCTCACAGTCAGAGACCTCTTTCTAGAACATTCTCCTTTTGTCCTCTCGTATTGAAGTCCTCTTCCAAGTGGGTCAGGTTCAGTTTCCGAGCAGAGCCCAAATCCAGGACTAGCCATGCCGTTGTCGCCGCTTTGGCTGCCGAAGTTGAACTGGCTGAAACGGTCGACGACACGGCGGATGGAGTCGATGGGTCCGCCCCCACCGACGCTGTGGCCACCGTCAAGCCTAAGAAAGGCAAGGCTGCATTGCCTCTCAAGAGGGACAGGTCAAGGTCTAAGAGGTTCTTGGAAATTCAACAATTGAGGGAGCGTAAGAAAGAGTATGACTTGAAGACAGCAATATCTTTGGTTAAACAAACAGCTAAAACCAAGTTTGTTGAAACAGTAGAAGCGCATTTCCGCCTCAACATTGACCCTAAATATAACGACCAACAGCTAAGAGCAACAGTAAATCTGCCCAAGGGAACTGGAAAACCGGTTAAAGTGGCTGTTCTCACTCAAGGTGAAAAATTCGATGAGGCAAAAAATGCAGGAGCTGATTTGGTGGGTGGAGAGGACCTTATAGAACAGATAAAAGGAGGATTCATGGAGTTTGATAAACTGATTGCTTCTCCGGATATGATGCCTAAGGTTGCTAGCCTAGGGAAGATTCTGGGGCCAAGAGGACTGATGCCAAACCCAAAAGCTGGCACTGTAACACCTAATATTCCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGGGCAGATAAAACTGGAATCGTCCACTTACCTTTTGGAAAAGCTGACTTTACAGAAGAGGATCTTCTTGTAAACTTGCTTGCTGCTGTGAAATCAGTAGAGACAAACAAACCTTCAGGTGCTAAAGGTGTGTACTGGAAAAGTGCCCACATATGCTCATCCATGGGGCCTTCAGTCAAGTTAAATATCAGGGAGATGCTTGATTACAGACCTCCATCAGAATAG 1050 0.4638 MASCTTPPSLMLAHPQDLSSSLRFFSHSQRPLSRTFSFCPLVLKSSSKWVRFSFRAEPKSRTSHAVVAALAAEVELAETVDDTADGVDGSAPTDAVATVKPKKGKAALPLKRDRSRSKRFLEIQQLRERKKEYDLKTAISLVKQTAKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFTEEDLLVNLLAAVKSVETNKPSGAKGVYWKSAHICSSMGPSVKLNIREMLDYRPPSE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0106 349 ProSitePatterns Ribosomal protein L1 signature. 233 251 IPR023673 -
Vra2g0106 349 CDD Ribosomal_L1 135 336 IPR028364 -
Vra2g0106 349 Pfam Ribosomal protein L1p/L10e family 143 332 IPR028364 -
Vra2g0106 349 Gene3D - 180 271 IPR016095 -
Vra2g0106 349 Gene3D - 133 336 - -
Vra2g0106 349 SUPERFAMILY Ribosomal protein L1 119 338 IPR023674 -
Vra2g0106 349 Hamap 50S ribosomal protein L1 [rplA]. 111 341 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vra2g0106 349 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 130 341 - -
Vra2g0106 349 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE 130 341 - -
Vra2g0106 349 TIGRFAM rplA_bact: ribosomal protein uL1 116 340 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0106 Vra-Chr2 829792 834942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0106 K02863 - gmx:100808549 572.007