Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0118 ATGGCTTCGTGTACCGCACCTTCTTCATCTCTCATGCTCACGCACTCACAAGACCTCTCTCCTTCTCTCCGTTCCAGAACCACCTCCTTCTCCCTCTCCAGAACCTTCTCTCTTTACCCTCTCGTTCTCAAGCCTCCTACCAACTCCCTCCACCTCACCTCCCCCCACTTCAGGCCTGCTGCCCTCGCCGCCGAGGTCGAGGTCGCCGAAACCCTCGACGACAAGGAGGATGATGGGCCCTCCAAGCCTAAGACAGGGAAGGCCGCATTACTTCTCAAGAGGGATAGGACAAGGTCTAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAGCGTAAGAAAGAGTACGACTTGAAGACAGCAATATCTTTGGTTAAAGAAACAGCTAAGACCAAATTTGTAGAAACAGTAGAAGCTCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCAACAGTAAGTCTGCCAAAGGGAACTGGAAAGCCCATTAAAGTGGCTGTTCTCACTCAAGGTGAAAGATTTGATGAAGCAAAAAACGCAGGAGCTGATTTGGTTGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGGTTCATGGAATTTGACAAGTTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCGATCCTTGGGAAGATTCTGGGGCCAAGAGGGCTGATGCCAAATCCAAAAGCTGGCACTGTAACAGCCAATATTCCTCAGGCTATATCAGAATTCAAGCAGGGAAAAGTTGAATACAGGGCAGACAAAACTGGAATCGTGCACTTGCCTTTCGGAAAAGCTGACTTTCCAGAAGAGGATCTACTTGTAAACTTGCTTGCTGCAATAAAATCAGTAGAGGCAAACAAACCTTCTGGTGCTAAAGGTGTGTACTGGAAAAGCGCACACATATGCTCAGCAATGGGACCATCAGTTAGGTTAAATATCAGGGACATGCTTGATTACAGGCTTCAATCAGAATAG 996 0.4669 MASCTAPSSSLMLTHSQDLSPSLRSRTTSFSLSRTFSLYPLVLKPPTNSLHLTSPHFRPAALAAEVEVAETLDDKEDDGPSKPKTGKAALLLKRDRTRSKRFLEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVAILGKILGPRGLMPNPKAGTVTANIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLLAAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIRDMLDYRLQSE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0118 331 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0118 331 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE 112 323 - -
Lja3g0118 331 CDD Ribosomal_L1 117 318 IPR028364 -
Lja3g0118 331 Gene3D - 115 318 - -
Lja3g0118 331 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 112 323 - -
Lja3g0118 331 ProSitePatterns Ribosomal protein L1 signature. 215 233 IPR023673 -
Lja3g0118 331 TIGRFAM rplA_bact: ribosomal protein uL1 98 321 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lja3g0118 331 Hamap 50S ribosomal protein L1 [rplA]. 93 323 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lja3g0118 331 Gene3D - 162 253 IPR016095 -
Lja3g0118 331 Pfam Ribosomal protein L1p/L10e family 125 314 IPR028364 -
Lja3g0118 331 SUPERFAMILY Ribosomal protein L1 101 320 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0118 Lja-Chr3 1263028 1266736 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0118 K02863 - gmx:100808549 512.686