Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00200 ATGAATTTGGCATCGGGTGTTGGTGGAAAGATTGAAAAATCCGAAGTTCTGTCCGCTGTTGAGAAGTACGAGAAGTATCATGTGCATTATGGAGGCAAAGAGGAAGAGAGGAAAGCCAATTACACTGATATGGTTAATAAGTACTATGATCTTTCAACCAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTCAAGAGAGCATCAAAAGACATGAGCACTTCCTTTCTTTACAACTTGGCTTGAAGCCAGGACAGAAGGTTTTGGATGTTGGATGTGGAATTGGGGGGCCACTTAGAGAAATTTCTCGATTCAGCTTGACATCAATCACAGGGTTGAACAACAATGAATACCAGATAACAAGGGGAAAGGAACTCAATCGCATTACTGGAGTGGACAAGACTTGCGACTTTGTCAAGGCTGACTTTATGAAAATGTCATTCCCAGACAATAGTTTTGATGCAGTGTATGCAATTGAAGCCACCTGCCATGCACCTGATGCTTATGGATGCTACAAAGAGATTTTTAGAGTGTTGAAGCCTGGCCAACATTTTGCTGCATATGAATGGTGCATGACTGATGCTTTTGATCCCAATAACAATGAACATCAAAGAATAAAGGCAGAAATTGAGATTGGCAATGGACTTCCTGATGTTAGATTGACCACAAAATGTCTTGAAGCTCTGAAGCAAGCAGGTTTTGAGATAATTTGGGAGAAAGATCTTGCAGTTGACTCTCCTCTTCCTTGGTACTTGCCTCTGGATACAAGTCACTTCTCACTCAGTAGCTTCCGTCTAACTGCTGTTGGACGGCTTTTCACAAGAAACCTGGTCAAGGCTATGGAATTTATTGGATTGGCTCCAGAGGGAAGTCTAAGGGTTCAAGATTTCCTAGAGAAGGCTGCAGAGGGACTAGTTGAAGGTGGAAAGAAAGAGATTTTCACACCAATGTACTTCTTTTTGGCTCGGAAGCCTGATTCAGGCAGTCACTAA 1023 0.4252 MNLASGVGGKIEKSEVLSAVEKYEKYHVHYGGKEEERKANYTDMVNKYYDLSTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLSLQLGLKPGQKVLDVGCGIGGPLREISRFSLTSITGLNNNEYQITRGKELNRITGVDKTCDFVKADFMKMSFPDNSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQHFAAYEWCMTDAFDPNNNEHQRIKAEIEIGNGLPDVRLTTKCLEALKQAGFEIIWEKDLAVDSPLPWYLPLDTSHFSLSSFRLTAVGRLFTRNLVKAMEFIGLAPEGSLRVQDFLEKAAEGLVEGGKKEIFTPMYFFLARKPDSGSH. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00200 340 Gene3D Vaccinia Virus protein VP39 18 268 IPR029063 -
Seca6g00200 340 PANTHER ZGC:194242 2 335 - -
Seca6g00200 340 Pfam Sterol methyltransferase C-terminal 272 335 IPR013705 GO:0006694|GO:0008168
Seca6g00200 340 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 48 335 IPR030384 GO:0008168
Seca6g00200 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 336 IPR029063 -
Seca6g00200 340 CDD AdoMet_MTases 97 192 - -
Seca6g00200 340 Pfam Methyltransferase domain 99 196 IPR013216 GO:0008168
Seca6g00200 340 FunFam Methyltransferase 19 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00200 Seca-Chr6 4885213 4889405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00200 89 251 Acyl Lipid Metabolism Gene Families AT1G48600 32.515 3.11e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00200 K00559 - gmx:548073 639.802