Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1913 ATGTGGATTGCTAGCCCCAAGCCTTCCTTCCAGAACTCCTTCTTTACCATCACCATGGCTTCTTGTACAGCACCTTCGTCCCTCATGCTTACTCCTGCCGCTTCCTCTGTACACCCGCAAGAACTATCTTCCTCTCTACGTTGCTTCAATCTCAAGCCTCTCTCTAGAAATTTCTGTTTCTATCCTCTGGTTCTAAAGTCCAGAGCCAGAAACTCAGGCAAATTGATCGATGAAAAATTGAAGAAAGAAGCTAATTCTAGGTCGTGTCGTGTCGTAGTGGCTGCTTTGGCAGCAGAGGCCGAGGTCGCTGAGAGTGTGGAAGAGAAAGATGAAGTGGAGGGTGGTGATGGGTCGGCCACAAATTCTATTACCAAACCCAAATCGAAGAAAGGGAAGGCTGCATTGCCTCTCAAGAGGGACAGGGTTATATTTACCGCTCAGGGATTTCAGTTTCAGAAATTAGTGCTTCTTTATAAAGAAAGTACGAGGTCTAAGAGGCTCTTAGAGATTCAAAAATTGAGGGAGAATAAAAAAGAGTATGATTTAAAGGCAGCAATATCTCTACTTAAACAAACAGCAAATACCAAGTTTGTAGAAACGGTAGAAGCCCATTTTCGCCTCAACATTGACCCTAAATATAATGATCAACAATTAAGAGCAACAGTGAATTTGCCCAAGGGAACTGGAAAGCCTGTCAAAGTGGCTGTTCTTACTCAAGGTGAAAAGTTCGATGAGGCAAAAAATGCAGGAGCAGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTCATGGAGTTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGTCTAGGGAAAATCCTGGGGCCAAGGGGCTTGATGCCTAATCCAAAAGCTGGTACTGTTACGGCCAATATTCCTCAGGCTATAGCAGAATTCAAGCAGGGAAAGGTTGAATACAGAGCAGATAAAACTGGAATTGTGCACTTGCCGTTTGGAAAAGCTGACTTTTCTGAGGAGGACCTTCTTGTAAACCTGATTGCTGCTATAAAATCAGTAGACGCAAACAAACCGCCTGGTGCCAAAGGTGTGTACTGGAAAAGTGCACACATATGCTCTGCAATGGGACCTTCCATTAGGTTAAACATCAGGGAGATGCTGGATTACAGGCTTCCATCAAACATGTGA 1194 0.438 MWIASPKPSFQNSFFTITMASCTAPSSLMLTPAASSVHPQELSSSLRCFNLKPLSRNFCFYPLVLKSRARNSGKLIDEKLKKEANSRSCRVVVAALAAEAEVAESVEEKDEVEGGDGSATNSITKPKSKKGKAALPLKRDRVIFTAQGFQFQKLVLLYKESTRSKRLLEIQKLRENKKEYDLKAAISLLKQTANTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLIAAIKSVDANKPPGAKGVYWKSAHICSAMGPSIRLNIREMLDYRLPSNM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1913 397 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 91 392 - -
Dere07g1913 397 FunFam 50S ribosomal protein L1 227 318 - -
Dere07g1913 397 Gene3D - 227 318 IPR016095 -
Dere07g1913 397 Gene3D - 180 383 - -
Dere07g1913 397 CDD Ribosomal_L1 182 383 IPR028364 -
Dere07g1913 397 Hamap 50S ribosomal protein L1 [rplA]. 159 388 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Dere07g1913 397 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Dere07g1913 397 MobiDBLite consensus disorder prediction 107 127 - -
Dere07g1913 397 ProSitePatterns Ribosomal protein L1 signature. 280 298 IPR023673 -
Dere07g1913 397 Pfam Ribosomal protein L1p/L10e family 189 379 IPR028364 -
Dere07g1913 397 NCBIfam 50S ribosomal protein L1 163 387 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Dere07g1913 397 SUPERFAMILY Ribosomal protein L1 166 385 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1913 Dere-ChrDere07 31939329 31943426 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1913 07 31939329 31943426 Dere07g1913 07 31939329 31943426 ECH