Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0078 ATGAATTTGGCAAAGGGTGTTGGCGGAAACATTGACAAATCCCAAGTTCTGTCCGCTGTTGAAAAGTACGAGAAGTATCATGCTTCTTATGGAGGTCAGGAGGAGGAGAGGAAAGCTAATTATGTTGATATGGTTAATAAATTCTATGATCTTGCTACTAGCTTTTATGAGTATGGCTGGGGGCAATCTTTCCATTTTGCACCTAGATGGAAAGGGGAATCTGTTCGAGAAGGCATTAAAAGACACGAGCACTTCATTGCTTTACAACTTTGCCTAAAGCCTGGACAAAAGGTTTTGGATGTTGGATGTGGAATTGGGGGACCACTTAGAGAAATATCCCGATTCAGCTCAACATCAATAACAGGATTGAACAATAATGAGTATCAGATAACAAGAGCAAAGGAACTTAACCGTAATACTGGAGTGGACAAGACTTGCAATTTTGTCAAGGCTGACTTTATGAAGATGCCTTTCCCGGACAATAATTTTGATGCAGTATATGCAATTGAAGCCACCTGTCATGCACCAGATGTTTATGCATGCTACAAAGAGATCTTTAGAGTGTTAAAGCCTGGCCAACTTTTTGCGGCATATGAATGGTGCATGACTGAAGCTTTCGATCCCAACAATGAAGAACACCAAAAGATAAAGGAAGAAATTGAGGTTGGTGATGGACTTCCTGACATTAGATTGACCACAAAGTGTGTTGAAGCTCTAAAGCAAGCAGGTTTTGAGGTAATCTGGGAGAAAGATCTTGCAGTTAATTCTCCAGTTCCTTGGTACTTTCATTTGGATGCAAGTCACTTCTCACTTAGTACCTTTCCTCTAACATCTATTGGACGATTTTTCACAAGAAGTCTGATAAGGGCTTTAGAATTTGTTCGACTAGCTCCAAGGGGAAGTCTAAAAGTTCAAGAAATCTTACAAAGGGCAGCAGATGGACTACTTGAAGGTGGAAAGAAAGAGATTTTCACACCAATGTACTTCTTTTTGGCTCGAAAGCCTAATTTTGGTGGTCAATAA 1023 0.4018 MNLAKGVGGNIDKSQVLSAVEKYEKYHASYGGQEEERKANYVDMVNKFYDLATSFYEYGWGQSFHFAPRWKGESVREGIKRHEHFIALQLCLKPGQKVLDVGCGIGGPLREISRFSSTSITGLNNNEYQITRAKELNRNTGVDKTCNFVKADFMKMPFPDNNFDAVYAIEATCHAPDVYACYKEIFRVLKPGQLFAAYEWCMTEAFDPNNEEHQKIKEEIEVGDGLPDIRLTTKCVEALKQAGFEVIWEKDLAVNSPVPWYFHLDASHFSLSTFPLTSIGRFFTRSLIRALEFVRLAPRGSLKVQEILQRAADGLLEGGKKEIFTPMYFFLARKPNFGGQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0078 340 Pfam Methyltransferase domain 99 195 IPR013216 GO:0008168
Gso12g0078 340 Pfam Sterol methyltransferase C-terminal 272 335 IPR013705 GO:0006694|GO:0008168
Gso12g0078 340 PANTHER ZGC:194242 2 336 - -
Gso12g0078 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 335 IPR029063 -
Gso12g0078 340 Gene3D Vaccinia Virus protein VP39 18 269 IPR029063 -
Gso12g0078 340 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 48 335 IPR030384 GO:0008168
Gso12g0078 340 CDD AdoMet_MTases 97 201 - -
Gso12g0078 340 PANTHER METHYLTRANSFERASE 2 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0078 Gso-Chr12 666308 672088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0078 78 251 Acyl Lipid Metabolism Gene Families AT1G48600 32.759 2.50e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0078 K00559 - gmx:100817534 703.745