Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1537 ATGATTTATCACCAGACGAGGTCTAAGAGGTTCTTGGAAATTCAACAATTGAGAGAGCGTAAGAAAGAGTACGACTTGAAGACAGCAATATCTTTGGTCAAAGCAACGGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCCAAATATAATGATCAGCAGTTAAGAGCAACGGTAAATCTGCCAAAGGGAACTGGGAAGCCGGTTAAAGTGGCTGTTCTAACTCAAGGTGAAAAATTTGATGAAGCAAAAAATGCTGGAGCTGATTTGGTGGGTGGAGAGGATCTGATAGAACAGATAAAAGGAGGGTTCATGGAATTTGACAAGTTGATTGCTTCACCAGATATGATGCCTAAGGTGGCTAGCCTAGGGAAGATTCTGGGTCCAAGAGGACTGATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATACCTCAGGCCATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGAATTGTGCACTTACCCTTTGGAAAAGCCGACTTTTCGGAGGAGGATCTACTTGTAAACTTGCTCGCTGCAGTAAAATCAGTTGACACAAACAAACCATCGGGCGCTAAAGGTGTGTACTGGAAGAGTGCCCACATATGTTCAGCAATGGGACCTTCAATCAGGTTAAACATCAGGGAGATGCTTGATTACAGACCAGATGCATGA 720 0.4333 MIYHQTRSKRFLEIQQLRERKKEYDLKTAISLVKATAKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAVKSVDTNKPSGAKGVYWKSAHICSAMGPSIRLNIREMLDYRPDA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1537 239 ProSitePatterns Ribosomal protein L1 signature. 124 142 IPR023673 -
Amo13g1537 239 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 4 230 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo13g1537 239 TIGRFAM rplA_bact: ribosomal protein uL1 7 231 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo13g1537 239 Gene3D - 71 162 IPR016095 -
Amo13g1537 239 Gene3D - 24 227 - -
Amo13g1537 239 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 21 232 - -
Amo13g1537 239 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE 21 232 - -
Amo13g1537 239 Hamap 50S ribosomal protein L1 [rplA]. 4 232 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo13g1537 239 SUPERFAMILY Ribosomal protein L1 10 229 IPR023674 -
Amo13g1537 239 Pfam Ribosomal protein L1p/L10e family 34 223 IPR028364 -
Amo13g1537 239 CDD Ribosomal_L1 26 227 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1537 Amo-Chr13 20853798 20857244 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1537 K02863 - gmx:100819124 448.743