Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3250 ATGAATTTGGCATCAGGTGTTGGTGGGAAGACTGACAAATCCCAAGTTCTGTCTGCTGTTGAGAATGGCGACAGtagtagtggtgacgacaacaatgatggtggtggtggtggtaatgccGACGGTAACGATTGTGGCAGTGCCGACGACAGTGGTTGTGGTGGTACCGGTGGTGATTGTGGTGGTgtcagtggtgatggtggtggcaaagtcagtggtggtggtgacattgcctgtggtaGTGGCAGCAGCGCTGGTGGTCGAGATCATGGTCGTGGTGGCGGCCATGACGATGGTAATGGTGATGAAgtttgtggtggtggaggcgatgctagtggttgtggtagttgtggcagcggtgatggtggtggcgatgctggtggtcgttgtagttgtggcagcgatgatggtggtggtggtgccggtGATGATGGTGGCTGCGGAGATGGCGGCAGTAGTAGTGGTgcaatgacagtggtggtgacaatggcggtggttttggtggtggtggtggcaagaaaaGTTAATAAATACTATGACCTTGCTACTAGCTTTTATGAGTTTGGCTGGGGACAATCTTTCCATTTTGCACCCAGaTGGAAAAGGGAGTCTCTTCAAGAAAGCATCAAAAGACATGAACACTTCATTGCTTTACAGCTTGGCCTAAAGCCTGGACAAAAGGTTTTGGATGTTGGTTGTGGAATAGGGGGGCCACTTAGAGAAATCTCTCGATTCAGCTTAACATCAATCACAGGATTGAACAATAATGAGTACCAGATAACAAGAGCAAAGGTATCTGACTTCATGAAAATGCCATTCCCAGACAATAGTTTTGATGTAGTGTACGCAATTGAAGCCACCTGCCATGCACCAGATGTTTATGCATGCTACAAAGAGGTCTTTAGAGTGTTGAATCTTGGTCAATCTTTTGCTGCATATGAATGGTGCATAACTAAAGCTTTTGATCCCAACAATGAAGAACACCAAAAGATAAAGGCAGAAATTGAGGTTGGTGATGCACTTCCCGACATTAGATTGACCACAAAGTGTGTTGAAGCTCTGAAGCAAGCAGAATTTGTTGGACTAGCTCCAAGGGGAAGTCTAAGGGTTGAAGAATTTCTACAAAAGGCAGTAGAAGGGCTAGTTGAAGGTGGAAAGAAAGAGATTTTCACACCATTATACTTCTTTTTGGCTCGAAAGCCTGATCTGGCAGTCACTAAGGTGATGTAG 1230 0.3455 MNLASGVGGKTDKSQVLSAVENGDSSSGDDNNDGGGGGNADGNDCGSADDSGCGGTGGDCGGVSGDGGGKVSGGGDIACGSGSSAGGRDHGRGGGHDDGNGDEVCGGGGDASGCGSCGSGDGGGDAGGRCSCGSDDGGGGAGDDGGCGDGGSSSGAMTVVVTMAVVLVVVVARKVNKYYDLATSFYEFGWGQSFHFAPRWKRESLQESIKRHEHFIALQLGLKPGQKVLDVGCGIGGPLREISRFSLTSITGLNNNEYQITRAKVSDFMKMPFPDNSFDVVYAIEATCHAPDVYACYKEVFRVLNLGQSFAAYEWCITKAFDPNNEEHQKIKAEIEVGDALPDIRLTTKCVEALKQAEFVGLAPRGSLRVEEFLQKAVEGLVEGGKKEIFTPLYFFLARKPDLAVTKVM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3250 409 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 174 401 IPR029063 -
Ssu3g3250 409 PANTHER CYCLOARTENOL-C-24-METHYLTRANSFERASE 355 402 - -
Ssu3g3250 409 Pfam Methyltransferase domain 229 307 IPR013216 GO:0008168
Ssu3g3250 409 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 178 401 IPR030384 GO:0008168
Ssu3g3250 409 PANTHER CYCLOARTENOL-C-24-METHYLTRANSFERASE 174 359 - -
Ssu3g3250 409 PANTHER ZGC:194242 174 359 - -
Ssu3g3250 409 PANTHER ZGC:194242 355 402 - -
Ssu3g3250 409 MobiDBLite consensus disorder prediction 1 43 - -
Ssu3g3250 409 MobiDBLite consensus disorder prediction 7 33 - -
Ssu3g3250 409 Pfam Sterol methyltransferase C-terminal 354 401 IPR013705 GO:0006694|GO:0008168
Ssu3g3250 409 Gene3D Vaccinia Virus protein VP39 169 401 IPR029063 -
Ssu3g3250 409 CDD AdoMet_MTases 227 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3250 Ssu-Chr3 88873376 88878825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3250 213 332 Acyl Lipid Metabolism Gene Families AT1G48600 33.083 1.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3250 K00559 - gmx:100817534 385.956