Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1954 ATGCATTCCCAAGTCGCAGTCGCCTTGTTTCCAGAAACTCCCCGCTCCTCCATGGCTACTTCTACCTCCCCTTCATCTCTCATGCTAACGCATACCGCTTCCACTGTGCACCCGCATGACCTCACTCCCTCACTACGCTGCTTCAATCCCAAGCCTCTATTTAGAACTTTCTCTGTCTATCCTCTGGTTTTAAGGTCCAGAGGGAGGAACTCAGTAAAATGGGTCCATGTGAATTTGCAAAAAGAAGCCAACTCTAGGTCTTACCATGTAGTTGTGGCTGCTTTGGCTGCGGAGGCCGAGGTCGCTGAGAGGGTGGAAGGGGAAGGGGAAGTGGAGGGTGGTGATGGGTCGGCAGCAACAAATACTATTACCTCATCCAAGCCAAAGAAAGGGAAGGCTGCATTGCCTCTCAAGAGGGATAGGAGGAGGTCTAAGAGGTTTCTAGAGATTCAAAGATTGAGGGAGAATAAAAAAGAGTACGACTTAAAGACAGCAATATCTTTGCTTAAAGAAACAGCGAATTTAAAGTTTGTAGAAACTGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAATTAAGAGCAACTGTAAATTTGCCCAAGGGAACTGGAAAACCTGTCAAAGTGGCTGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAAAATGCAGGAGCTGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTCATGGAGTTTGATAAATTGATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGGAAAATCCTGGGGCCAAGGGGACTGATGCCTAATCCAAAAGCTGGAACTGTAACATCTAACATTCCTCAGGCTATAGCAGAATTTAAGCAGGGAAAGGTTGAATACAGGGCAGATAAAACTGGAATTGTTCACTTGCCTTTTGGAAAAGCTGACTTTGCTGACGAGGACCTTTTTGTAAACTTGATTGCTGCAATAAAATCGGTGGAAGCAAACAAACCACCGGGTGCTAAAGGTGTGTACTGGAAAAGTGCATTCATATGCTCAGCAATGGGGCCTTCTATTAGGTTAAATATCAAGGAGATGCTGGATTACAGGCTTCCATCAAATATATGA 1134 0.4471 MHSQVAVALFPETPRSSMATSTSPSSLMLTHTASTVHPHDLTPSLRCFNPKPLFRTFSVYPLVLRSRGRNSVKWVHVNLQKEANSRSYHVVVAALAAEAEVAERVEGEGEVEGGDGSAATNTITSSKPKKGKAALPLKRDRRRSKRFLEIQRLRENKKEYDLKTAISLLKETANLKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTSNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFADEDLFVNLIAAIKSVEANKPPGAKGVYWKSAFICSAMGPSIRLNIKEMLDYRLPSNI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1954 377 Gene3D - 160 363 - -
Glsi04g1954 377 Gene3D - 207 298 IPR016095 -
Glsi04g1954 377 CDD Ribosomal_L1 162 363 IPR028364 -
Glsi04g1954 377 ProSitePatterns Ribosomal protein L1 signature. 260 278 IPR023673 -
Glsi04g1954 377 Pfam Ribosomal protein L1p/L10e family 169 359 IPR028364 -
Glsi04g1954 377 MobiDBLite consensus disorder prediction 107 137 - -
Glsi04g1954 377 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 87 372 - -
Glsi04g1954 377 NCBIfam 50S ribosomal protein L1 143 367 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Glsi04g1954 377 Hamap 50S ribosomal protein L1 [rplA]. 141 368 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Glsi04g1954 377 SUPERFAMILY Ribosomal protein L1 147 365 IPR023674 -
Glsi04g1954 377 FunFam 50S ribosomal protein L1 207 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1954 Glsi-ChrGlsi04 69313907 69320380 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1954 04 69313907 69320380 Glsi04g1954 04 69313907 69320380 ECH