Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0216 ATGGCAACTTGCGCCACACATTCTTCTCTCATGCTCACTCCTCACACTTCCTCTGTACATCCCCAAGACCTCACTCCTTCGCTTTCCTCCTTCAATCCTAATCCTTTGGCTAGAAATTTCTCTCTCTACCCATTGCGTTTAAAGTCTAGAGCGAGAATCTCTGGCAGATGGATCGACGTAAAATTGCAGAAAGAAGCTAATTCTAGGGCTTCCATTGTCGTTGTCGCTGAGAGTTTGGAACCGAGGAATGGTGGTTCCGCCACGAATACTATTACTAAACCCAAGTCTAACAGAGGGAGGGCGGCATTGCCTCTCAGAAGGGGCAGGATGGGATGTAAGAGGTTCTTGGAGATCGAAAGACTGAGGGAGTTTATGAAGGAGTATGGTTTAAAGACAGCAATATCTTTACTAAAACAAACAGCACATACAAAATTTGTAGGAACAGTAGAAGCCCATTTTCGTCTCAACATTGACCCTAAACATTATGATCAACAACTACGAGCAATGGTAAAATTACCCAAGGGAATTGGAAAGCCTTTCAAAGTGGCTGTTCTTACTCAAGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAGAGGAGGATTTATAGAATTTGATAAATTGATTGCTTCTCCTGATATGATGCCTAAGGTGTTGCCTTTTCTCACCAATTCTAAACTTTCTGTTGCTGGTCTAGAGAAAATCCTGGGGCCAACGGGCCTGATGCCTGATCCAAAAGATGGTACTGTAACAGCCAATATTCCTCAGGCTATAGCAGAGTTCAAGCAAGCAAAGGTCGAATACAGGGCCGATAAAACTGGAATTGTGCATTTGCCTTTCGGAAAAACCGATTTTTGCGAGGAGGACCTTCTTGTAAACTTGACTGCCGCAATAAAATCTGTAGAAGTAAACAAACCACCTGGTGTTAAAGGTGTGTACTGGAGAAGTGCACACATATCAGCAATGGGACCTTCTATCAGGAAAAGTGACATAGAGCCCAGGGATGAAAATGGAGATCCTTTGGTGGCTATATCTATGTTGAAATCTGGCCCCAAAAGGCAAAAGTTGAATGCACGCGGCATTGTCTCTGAACCCAGAGGAGGATAA 1110 0.4378 MATCATHSSLMLTPHTSSVHPQDLTPSLSSFNPNPLARNFSLYPLRLKSRARISGRWIDVKLQKEANSRASIVVVAESLEPRNGGSATNTITKPKSNRGRAALPLRRGRMGCKRFLEIERLREFMKEYGLKTAISLLKQTAHTKFVGTVEAHFRLNIDPKHYDQQLRAMVKLPKGIGKPFKVAVLTQDLVGGEDLIEQIRGGFIEFDKLIASPDMMPKVLPFLTNSKLSVAGLEKILGPTGLMPDPKDGTVTANIPQAIAEFKQAKVEYRADKTGIVHLPFGKTDFCEEDLLVNLTAAIKSVEVNKPPGVKGVYWRSAHISAMGPSIRKSDIEPRDENGDPLVAISMLKSGPKRQKLNARGIVSEPRGG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0216 369 CDD Ribosomal_L1 130 328 IPR028364 -
Lele31g0216 369 Pfam Ribosomal protein L1p/L10e family 137 321 IPR028364 -
Lele31g0216 369 Gene3D - 130 327 - -
Lele31g0216 369 TIGRFAM rplA_bact: ribosomal protein uL1 113 328 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lele31g0216 369 SUPERFAMILY Ribosomal protein L1 126 327 IPR023674 -
Lele31g0216 369 MobiDBLite consensus disorder prediction 1 21 - -
Lele31g0216 369 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 122 330 - -
Lele31g0216 369 Gene3D - 175 265 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0216 Lele-ChrLele31 2176985 2182644 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1359 29 20266823 20272214 Lele31g0216 31 2176985 2182644 hybridization
Lele30g0194 30 2054122 2059376 Lele31g0216 31 2176985 2182644 hybridization