LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0119	ATGGACTCCGTCGTGAATGCGGCGGTGGAAGAGATCTGTGGTGGGATTGAAGATGGCGTAACTCTTGCAGGCTTATGGGAGAAACTGCAAGGCTCACCGAGTTTCTCTTCCACCAATCTCAATCTCAATCGCAACGTGAAAAGAGCCTTATGGACGAACCTGCTCCGCATTCCGGTTCTCCGTTTTGAACCACCGCCATCTTCATCGGAATTGGAGGATGCTGAGAACCTCAATTTGAAGGTGTTTCCTCAATCGAGCCTTGTTCACAACTTTCTCGGTCTATACGAATCGCAATCAATTCAACATGCTCAAACGCGCGTGCTTCACCTTCTCGCTAAAGCTAGAAGAAATGGTATTACTCAAACTCGGCTTGCTAAACGGTTGAACATCGATGCCAATAAATTCCACTATGTGTTGAGGAGTCTTGAGTGTCGAGGTTTAATCGTCAAGCGCTCTGCGATTGAGAGGAAGAAGCGAATCTCCAGTTTTGGTGAGTCTGAAAATTATTCATCTGTAACTACCAATTTAGTGTTCCTTCGTTGCTATGCGAAACATCTTGCAGATGGAACCACGTTTCAAACAGACGTTCATCTAAAGGATGATTACTCACCTCAAATGAAAGCTGTTTGTGACAAACTTGCAAAAGCCAAAGGCAAGGTTCTTCTTGTGTCGGATATTAGGAAGGATCTTGGTTACTGTGGATTTCGTCCAAAACGAAGGGCTTGGAATCAAATTACTCAAAGGTTGAATGCAGATGGTATTGTGGAGCAGTTTTTTGCTAAGGTGAATGGCAAGATTGAAACTTGCCTGCAGCTTCTTGACCCAATAACTGCTGGATCTGGAAATGAAGATAAAAAGTTGAACTCTGGAAAAACATGTCAAGTTATTGATCAGCTTGTGGAGCTTCCCACGGAGCATCAAATTTTTGATATTATTGATGCTGCAGGATCTTGTGGCATTACTTTGAAGGAGATATGTGAGAGACTTGGGATTGAACTGAAAAAAAGCACCATTCCATTTGTAGATTTTTGCGGTAGATTTAAAATGATAGTAAGGGAAGAACAATGCCTAAAATCTAAGACATATCGAGTTTGGTCTTCTAATTTCAAACTTGAACCAGAAATTGAACTTAAACCCGAACTTGTGGCTTCGACTGCCAGTGAGGAACTTGCTGGCCATGCAAATTTTTCTTTAAGTGTGGATGACACTCAAAGGGCAAATAGGATACTTGAAAGACTAAAGGATGAAAGGTTCATTTTGAAACCTGAACTAAACAGGTGGCTTAGTAGCTTTGAGAAGGATAAGCCTACAAAAGTGGATCCCAACACTATTGATGGAATATTAAGCATACTTAAAAAACAAGTGCTGGTCAAATGCATAAAAGTATATTCACCTGTTATTTTTGAATATTTGAGCACAAAAGTTTGTGTGGTAGTGCGTCCATCCACGAGTCTATCTCCAGAGTTATTTGATGAAATTGAAGATAGGATACGAACATTTCTTCCCAGGAAAAGTACTTCACATCAGAAAAATGATGAATTGATACTTGTAATGGAGGATATTCAGAAAAATCAAAGTGTTATAGTTCCAGATGGGCAGGTACTTAGCATGTATTCTTGTAAGCGCCGTCGCCATTTTGTTAGTCAGTTCAAAGATGAGGAGAAACAGGATAATTCACCTGAAGGCATGGGTGATTCATCTTGTCGTAGGAAAAATAAATTCACCGAGCTCAGGCCCGCAAAACATGCCAGAATTGATGCATTAACTGATGTTGTGGATATGCACATTGAACAATCACATAATTTGGATGTGCAGTCAGGAGACTGTGCCACAGGCATGGAAGAATTTGAGGGAAGTACACCTGAAGACTGTACCCCCCTCATTAACCAGGGTGTCTTAAAGAAAATGAAGCCTACACGTCGTAGAAGATTCAGTTGGTCAAACAAAACTGAGAGGCAGTTGGTGATCCAATATGTTAAACACCGTGCTGTTCTTGGTGCCAAAAGTCGTGTATATTGGAAGTCAATTTCTGATCTACCAACTTCTCCAACTGCTTGTATGGAAAGAATGACTTTGTTGAATGGTAACTTGAGATTTCGGACAGCCGTGAATAAACTCTGTAACATACTTAGTGAACGATATGCAAAACATCTGCAGAAGTATCAGAACATGTCATTAAACTCAGATGAATGCAAACAGTTTGTGCGTTCCCAGCCCTACGAAGGTATCTCAAATAATAGTCCAGATGTTGAAATTCAAACGAGAAGTCTAAACAGAGAAGCTTGGGATGACTTTGAGAACAAAACTATCAAGACAGCCCTTGAGGAGATTCTTCGCTGCAAGATTATAGCTAAGCTGGATGCCTCCTCCCAAAAGGGTCAAATGCAATATGAAGGGTGCTCAGATGCAAGTCTGAATGCTGATGGCTATGAATCTCAAGAAAATGCAGAAATTACATCAGCTATCCCTTGTGAAATTGTTCGGAGTCATCGTGGGAAGGCCCATTCGTTGTCCTCCCAAAGATCACGTCGGCAGCGACTTGATAAAAAATTTACCGGGTTTCTGAAGAACATGGCTAATGTTTATGGACAAGTAAACGAATCATTAGCTATTTCAAATGCTGTAGAGCTATTTAAACTTGTTTTTTTAAGCACCTCAACTGGTCCTCAGCCACCAAATTTACTAGCAGATATTCTTCACCGATACTCAGAACATGATCTATTTGCTGCTTTTAACTATCTTAGAGAGAAAAAAATTATGGTTGGGGGCACTGGCAGTGAACGTTTTGAACTTTCACAGCAGTTCTTGCAAAGTGTTTCGAAGTCACCGTTTCCATTTAATACTGGAAAGCAAGCTGTTAAATTTGCTGCGTGGCTGAAGGAAAGAGGCGAAGACCTCACAGAAGGGGGTGCCAAAATTTCTGAAGATTTAAAATGTTATGCACGACGATTGCTGTTAGAGTATTCCAATCAAGAACATGGATATGGCATTTGTGCAGAGGTCTTCAAGGTTGTTTATGCTGCCATTCAAAAGGCTGGTGACCAAGGATTAAGCATGGGAGAAATTTCCAAGATTATAAACCTTCCAGGAGCTAAGAGTCTGGAAAAATTCAATTGTCAGATTGATCCT	3129	0.4081	MDSVVNAAVEEICGGIEDGVTLAGLWEKLQGSPSFSSTNLNLNRNVKRALWTNLLRIPVLRFEPPPSSSELEDAENLNLKVFPQSSLVHNFLGLYESQSIQHAQTRVLHLLAKARRNGITQTRLAKRLNIDANKFHYVLRSLECRGLIVKRSAIERKKRISSFGESENYSSVTTNLVFLRCYAKHLADGTTFQTDVHLKDDYSPQMKAVCDKLAKAKGKVLLVSDIRKDLGYCGFRPKRRAWNQITQRLNADGIVEQFFAKVNGKIETCLQLLDPITAGSGNEDKKLNSGKTCQVIDQLVELPTEHQIFDIIDAAGSCGITLKEICERLGIELKKSTIPFVDFCGRFKMIVREEQCLKSKTYRVWSSNFKLEPEIELKPELVASTASEELAGHANFSLSVDDTQRANRILERLKDERFILKPELNRWLSSFEKDKPTKVDPNTIDGILSILKKQVLVKCIKVYSPVIFEYLSTKVCVVVRPSTSLSPELFDEIEDRIRTFLPRKSTSHQKNDELILVMEDIQKNQSVIVPDGQVLSMYSCKRRRHFVSQFKDEEKQDNSPEGMGDSSCRRKNKFTELRPAKHARIDALTDVVDMHIEQSHNLDVQSGDCATGMEEFEGSTPEDCTPLINQGVLKKMKPTRRRRFSWSNKTERQLVIQYVKHRAVLGAKSRVYWKSISDLPTSPTACMERMTLLNGNLRFRTAVNKLCNILSERYAKHLQKYQNMSLNSDECKQFVRSQPYEGISNNSPDVEIQTRSLNREAWDDFENKTIKTALEEILRCKIIAKLDASSQKGQMQYEGCSDASLNADGYESQENAEITSAIPCEIVRSHRGKAHSLSSQRSRRQRLDKKFTGFLKNMANVYGQVNESLAISNAVELFKLVFLSTSTGPQPPNLLADILHRYSEHDLFAAFNYLREKKIMVGGTGSERFELSQQFLQSVSKSPFPFNTGKQAVKFAAWLKERGEDLTEGGAKISEDLKCYARRLLLEYSNQEHGYGICAEVFKVVYAAIQKAGDQGLSMGEISKIINLPGAKSLEKFNCQIDP	1043

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0119	1043	Pfam	B-block binding subunit of TFIIIC	104	184	IPR007309	-
	Pvu11g0119	1043	MobiDBLite	consensus disorder prediction	550	571	-	-
	Pvu11g0119	1043	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	531	1032	IPR044210	GO:0000127\|GO:0003677\|GO:0006384
	Pvu11g0119	1043	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	1	532	IPR044210	GO:0000127\|GO:0003677\|GO:0006384
	Pvu11g0119	1043	SUPERFAMILY	"Winged helix" DNA-binding domain	99	159	IPR036390	-
	Pvu11g0119	1043	Gene3D	-	87	162	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0119	Pvu-Chr11	869861	878683	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0119	K15199		-	gmx:100816444	650.588