Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0079 ATGAATTTAGCATCAGGTGTTGGTGGAAAGATTGAAAAATCTCAAATTTTGTCCGCAGTTGAGAAGTATGAGAAGTATCATGTTTGTCATGGAGGCCAAGAGGAAGAGAGAAAAGCTAATTACACTGATATGGTTAATAAATACTATGATCTTTCTACTAGCTTTTATGAGTTTGGCTGGGGGCAATCTTTCCATTTTGCCCACAGATGGAAAGGGGAATCTCTTCAAGAAAGCATTAAAAGACATGAGCACTTCCTTGCTTTACAACTTGGCCTAAAGCCTGGACAAAAGGTCCTGGATGTTGGATGTGGAATTGGGGGGCCACTAAGAGAAATTTCTCGATTCAGCTCAACATCAGTTACAGGATTGAACAACAATGAGTATCAGATAACAAGAGGAGAGGCGCTCAATCGCATTGCTGGAGTGGACAAGACTTGCAACTTTGTCAAGGCTGACTTCATGAAAATGCCATTCCAAGACAATAGTTTTGACGCAGTGTATGCAATTGAAGCCACCTGTCATGCACCAGATGCTTATGGATGCTACAAAGAGATCTTTAGAGTGTTGAAGCCTGGCCAATATTTTGCTGCATATGAATGGTGCATGACTGATGCTTTCGATCCCAACAACGAAGAGCACCAAAGGATAAAGGCAGAAATTGAGATTGGTGATGGACTCCCTGACATTAGATTGACCACAAAGTGTGCTGAAGCTCTAAAGCAAGCAGGTTTTGAGCTAATCTGGGAGAAAGATCTTGCGATTGAGTCTCCCGTTCCTTGGTACTTTCCTCTGGATACAAGTCGTTTCTCACTTACTAGCTTTCGTCTAACTGCTGTTGGACGATTTTTCACAAGAAGCTTGGTCAAGGGTCTAGAATATGTTGGATTTGCTCCAAAGGGAAGTCTAAGGGTTCAAGAATTCCTAGAAAAGGCTGCAGATGGACTAGTTGAAGGAGGAAAGAAAGAGATTTTCACACCAATGTATTTCTTTTTGGCTCGGAAGCCTGAATCAAGTGACTACTAA 1023 0.4184 MNLASGVGGKIEKSQILSAVEKYEKYHVCHGGQEEERKANYTDMVNKYYDLSTSFYEFGWGQSFHFAHRWKGESLQESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSVTGLNNNEYQITRGEALNRIAGVDKTCNFVKADFMKMPFQDNSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQYFAAYEWCMTDAFDPNNEEHQRIKAEIEIGDGLPDIRLTTKCAEALKQAGFELIWEKDLAIESPVPWYFPLDTSRFSLTSFRLTAVGRFFTRSLVKGLEYVGFAPKGSLRVQEFLEKAADGLVEGGKKEIFTPMYFFLARKPESSDY* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0079 340 CDD AdoMet_MTases 97 192 - -
Gso12g0079 340 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 48 335 IPR030384 GO:0008168
Gso12g0079 340 Pfam Sterol methyltransferase C-terminal 271 336 IPR013705 GO:0006694|GO:0008168
Gso12g0079 340 Pfam Methyltransferase domain 99 196 IPR013216 GO:0008168
Gso12g0079 340 PANTHER CYCLOARTENOL-C-24-METHYLTRANSFERASE 1 337 - -
Gso12g0079 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 336 IPR029063 -
Gso12g0079 340 Gene3D Vaccinia Virus protein VP39 19 267 IPR029063 -
Gso12g0079 340 PANTHER ZGC:194242 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0079 Gso-Chr12 673611 677640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0079 83 251 Acyl Lipid Metabolism Gene Families AT1G48600 33.136 6.73e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0079 K00559 - gmx:100818061 702.975