Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01564 ATGTCTTCCTTTCACCACCACACTCCGTTTCCCAACTTCACAACCACCATGGCCTCATGTACAACCACCCCACCTTCCTCATCTCTATTCTTATCAACCCACACAACCTCCTCCATCATCATCAACTCACAAGACCTCTCTTCTTCCAACCGCTCTTTCCCTCTTTCCAGAACCTTCTTTATCTCTCCCCTCGTTCTCAAACCCGCTAACGGTTTTCATTTAACCTACCAATCTAGGGTTTCGAATTCCTTTGTTTCTGCAGTTGCTGCTGGTGTCGCTGAAACGGTTGATGAAGAGGAGAGAGATGGTGCTGATGAGGATGAATCTGCTGTTCCTATTAACACTGTTACAGTTACCACTAAGCCTAAGACTGGGAAAGCTGCATTGCCACTTAGGAGTGACAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGCTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGATCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCAAAGGGAACCGGCAAGCCTATTAAAGTGGCTGTTCTTACTCAAGGTGAAAAATTCGATGAAGCAAAAAATGCAGGAGCTGATTTGGTAGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTCATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCTAAAGCTGGCACTGTAACGACTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTGCACTTGCCTTTTGGAAAAGCCGATTTTCCAGAAGAGGATCTTCTTACGAACTTGCTCTCTGCTATAAAATCAGTAGACTCAAACAAACCTTCAGGCGCGAAAGGTGTGTACTGGAAAAGTGCACACATATGCTCAGCAATGGGGCCTTCTGTTAGGTTAAATATCAAGGAGATGCTTGATTATAGGCTTCAGTCAGAATAA 1113 0.4277 MSSFHHHTPFPNFTTTMASCTTTPPSSSLFLSTHTTSSIIINSQDLSSSNRSFPLSRTFFISPLVLKPANGFHLTYQSRVSNSFVSAVAAGVAETVDEEERDGADEDESAVPINTVTVTTKPKTGKAALPLRSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLTNLLSAIKSVDSNKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01564 370 NCBIfam 50S ribosomal protein L1 137 361 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vivi5g01564 370 CDD Ribosomal_L1 156 357 IPR028364 -
Vivi5g01564 370 FunFam 50S ribosomal protein L1 201 292 - -
Vivi5g01564 370 Gene3D - 201 292 IPR016095 -
Vivi5g01564 370 Gene3D - 154 357 - -
Vivi5g01564 370 ProSitePatterns Ribosomal protein L1 signature. 254 272 IPR023673 -
Vivi5g01564 370 Hamap 50S ribosomal protein L1 [rplA]. 134 362 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vivi5g01564 370 SUPERFAMILY Ribosomal protein L1 140 359 IPR023674 -
Vivi5g01564 370 Pfam Ribosomal protein L1p/L10e family 164 353 IPR028364 -
Vivi5g01564 370 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 98 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01564 Vivi-Chr5 49352799 49357048 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01564 K02863 - gmx:100808549 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01564 5 49352799 49357048 Vivi5g01564 5 49352799 49357048 ECH