Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1359 ATGGCAACCTGCGCCACACATTCTTCTCTCATGCTCACTCCTCACACTTCCTCTGTACATCCCCAAGACATCACTCCTTCGCTTTCCTCCTTCAATCCTAATCCTTTGTCTAGAAATTTCTCTTTCTACCCATTGCGTTTAAAGTCTAGGGCGAGAATCTCTGGAAGATGGATCGACGTAAAATTGCAGAAGGATACTAATTCTAGGGCTTCCATTGTCGTTGTGTCTGAGAGTTTGGAACAGAGGAATGGTGGTTCCGCCACGAATACTATTACTAAACCCAAGTCTAACAGAGGGAGGGCGGCACTGCCTCTCAGAAGGGGCAGGATGGGATGTAAGAGGTTCTTGGAGATCGAAAGACTGAGGGAGTGTATGAAGGAGTATGGTTTAAAGACAGCAATATCTTTACTAAAACAAACAGCAAATACAAAATTTGTAGGAACAGTAGAAGCCCATTTTCGTCTCAACATTGACCCTAAATATTATGATCAACAACTACGAGCAACGGTAAATTTACCCAAGGGAATTGGAAAGCCTGTCAAAGTGGCTGTTCTTACTCAAGGGGAACAGTTCAATGAAGCAAAAAATGCTGGAGCAGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTTATAGAATTTGATAAATTGATTGCTTCTCCTGATATGATGCCTAAGGTTGCTAGTCTAGAGAAAATCCTGGGGCCAATGGGCCTGATGCCTGATCCAAAAGATGGTACTGTAACAGCCAATATTCCTCAGGCTATAGCAGAGTTCAAGCAAGCAAAGGTCGAATACAAGGCTGATAAAACTGGAATTGTGCATTTGCCTTTCGGAAAAACTGATTTTTGCGAGGAGGACCTTCTTGTAAACTTGAATGCTGCAATAAAATCTGTAGAAGTAAACAAACCACCTGGTGTTAAAGGTGTGTACTGGAGAAGTGCACACGTATCAGCTATGGGACCTTCTATCAGGTTAAACATCAGAGAGATGCTGGATCACAGCTCACAAGCTTCCATCTGA 1035 0.43 MATCATHSSLMLTPHTSSVHPQDITPSLSSFNPNPLSRNFSFYPLRLKSRARISGRWIDVKLQKDTNSRASIVVVSESLEQRNGGSATNTITKPKSNRGRAALPLRRGRMGCKRFLEIERLRECMKEYGLKTAISLLKQTANTKFVGTVEAHFRLNIDPKYYDQQLRATVNLPKGIGKPVKVAVLTQGEQFNEAKNAGADLVGGEDLIEQIKGGFIEFDKLIASPDMMPKVASLEKILGPMGLMPDPKDGTVTANIPQAIAEFKQAKVEYKADKTGIVHLPFGKTDFCEEDLLVNLNAAIKSVEVNKPPGVKGVYWRSAHVSAMGPSIRLNIREMLDHSSQASI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1359 344 TIGRFAM rplA_bact: ribosomal protein uL1 113 334 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lele29g1359 344 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 122 339 - -
Lele29g1359 344 SUPERFAMILY Ribosomal protein L1 126 332 IPR023674 -
Lele29g1359 344 Gene3D - 128 330 - -
Lele29g1359 344 FunFam 50S ribosomal protein L1 175 266 - -
Lele29g1359 344 Hamap 50S ribosomal protein L1 [rplA]. 106 335 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lele29g1359 344 MobiDBLite consensus disorder prediction 1 21 - -
Lele29g1359 344 Gene3D - 175 266 IPR016095 -
Lele29g1359 344 Pfam Ribosomal protein L1p/L10e family 137 322 IPR028364 -
Lele29g1359 344 CDD Ribosomal_L1 130 330 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1359 Lele-ChrLele29 20266823 20272214 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1359 29 20266823 20272214 Lele31g0216 31 2176985 2182644 hybridization
Lele29g1359 29 20266823 20272214 Lele32g1196 32 12673224 12677533 hybridization