Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0691 . . Adu02g02108 Aed2g1013 Aev02g1937 Ahy12g2192 Ahy2g1904 Aip02g02455 . . . Apr10g0824 Arst2g02743 . . Bva02g00475 Car06g02905 Cca01g01992 . . . . . Gma01g01330 Gso1g1103 Gso3g0340 Lal14g0780 . Lal19g0309 . Lan1g0706 . Lapu10g01361 Lasa7g00734 . . . . Lja3g3408 Mal7g0931 . Mesa13g04482 . Mtr4g0833 . . . Psa7g5207 Pste6g00380 Pumo7g01708 . Seca4g10910 . Ssu4g2477 . Tpr4g1053 Trre7g00840 Tsu06g00771 Vian9g00921 Vifa2g05008 Vimu9g00920 Viun10g01407 Vivi5g00945 .
Pvu10g0692 . . Adu02g02111 Aed2g1160 Aev02g1938 Ahy12g2193 Ahy2g1905 Aip02g02460 . . . Apr10g0827 Arst2g02744 . . Bva02g00477 Car06g02914 Cca01g01993 . Dod07g1655 . . . Gma01g01331 Gso1g1105 Gso3g0338 Lal14g0783 . Lal19g0306 . Lan1g0707 . Lapu10g01364 Lasa7g00731 . . . . Lja3g3410 Mal7g0925 Mepo2g00864 Mesa13g04486 . Mtr4g0829 . Phco1g01135 . Psa7g5229 Pste6g00372 Pumo7g01710 . Seca2g01333 Spst4g00905 Ssu4g2478 . . Trre7g00837 Tsu06g00767 Vian9g00920 Vifa2g05009 Vimu9g00922 Viun10g01408 Vivi5g00939 .
Pvu10g0693 . . . . Aev02g1939 Ahy12g2194 . . . . . Apr10g0830 . . . . Car06g02915 Cca01g01995 . . . . . . . Gso3g0333 . . . Lan12g0189 . . . . . . . . . Mal7g0922 . . . Mtr4g0828 . . . Psa7g5269 . Pumo7g01712 . . . Ssu4g2479 . Tpr4g1051 . Tsu06g00766 . . . . . .
Pvu10g0694 . . . . . . . . . . . Apr10g0831 . . . Bva02g00478 . Cca01g01996 . . . . . . . Gso3g0329 Lal14g0785 . . . . . . . . . . . Lja3g3411 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0695 . . . . Aev02g1941 Ahy12g2195 . . . . . Apr10g0832 . . . . Car06g02917 Cca01g01997 . . . . . Gma01g01337 Gso1g1107 Gso3g0328 . . . . . . . . . . . . . . . . . Mtr4g0826 . . . Psa7g5270 . . . . . Ssu4g2480 . . . . . . . . . .
Pvu10g0696 . . . . . . . . . . . Apr10g0833 . . . Bva02g00480 . . . . . . . . . Gso3g0327 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2481 . . . Tsu06g00762 . . . . . .
Pvu10g0697 . . Adu02g02115 Aed2g1002 Aev02g1944 Ahy12g2196 . Aip02g02462 . . . Apr10g0834 . . . Bva02g00482 . Cca01g01999 . Dod07g1661 . . . Gma01g01340 Gso1g1108 Gso3g0325 . . . . . . . . . . . . . Mal7g0920 . . . Mtr4g0825 . Phco1g01121 . . . Pumo7g01720 . . . Ssu4g2483 . Tpr4g1047 . . . . . . Vivi5g00929 .
Pvu10g0698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0689 Chr10 14802833 14809835 -
Pvu Pvu10g0690 Chr10 15049545 15050316 -
Pvu Pvu10g0691 Chr10 15073965 15075561 -
Adu Adu02g02108 Chr02 84645508 84649628 -
Aed Aed2g1013 Chr2 8013591 8015787 +
Aev Aev02g1937 Chr02 21212625 21213209 +
Ahy Ahy12g2192 Chr12 107974634 107976366 -
Ahy Ahy2g1904 Chr2 92844051 92845480 -
Aip Aip02g02455 Chr02 98218156 98220113 -
Apr Apr10g0824 Chr10 20455232 20456141 -
Arst Arst2g02743 Chr2 84106830 84108262 -
Bva Bva02g00475 Chr02 6200138 6201241 -
Car Car06g02905 Chr06 46512357 46513656 +
Cca Cca01g01992 Chr01 46511007 46512740 +
Gma Gma01g01330 Chr01 46592721 46603108 -
Gso Gso1g1103 Chr1 44937256 44941203 -
Gso Gso3g0340 Chr3 5170970 5172779 +
Lal Lal14g0780 Chr14 9673381 9673934 -
Lal Lal19g0309 Chr19 3235194 3235781 +
Lan Lan1g0706 Chr1 15777265 15778796 -
Lapu Lapu10g01361 Chr10 20183219 20184954 +
Lasa Lasa7g00734 Chr7 50479629 50479979 +
Lja Lja3g3408 Chr3 67194496 67195399 -
Mal Mal7g0931 Chr7 25813759 25814868 -
Mesa Mesa13g04482 Chr13 70719228 70721036 +
Mtr Mtr4g0833 Chr4 10706929 10708004 -
Psa Psa7g5207 Chr7 456819943 456821026 +
Pste Pste6g00380 Chr6 1263410 1265967 +
Pumo Pumo7g01708 Chr7 45133681 45135593 -
Seca Seca4g10910 Chr4 246742666 246743748 -
Ssu Ssu4g2477 Chr4 62190092 62191878 -
Tpr Tpr4g1053 Chr4 10218627 10220416 -
Trre Trre7g00840 Chr7 5625697 5627006 -
Tsu Tsu06g00771 Chr06 6874630 6875966 -
Vian Vian9g00921 Chr9 17082208 17087844 +
Vifa Vifa2g05008 Chr2 1486155953 1486156315 +
Vimu Vimu9g00920 Chr9 15136419 15136832 -
Viun Viun10g01407 Chr10 28137347 28138157 -
Vivi Vivi5g00945 Chr5 21012000 21012840 -
Pvu Pvu10g0692 Chr10 15124292 15126129 -
Adu Adu02g02111 Chr02 84678885 84679172 -
Aed Aed2g1160 Chr2 9690894 9691265 +
Aev Aev02g1938 Chr02 21216710 21218455 -
Ahy Ahy12g2193 Chr12 107999193 108000310 -
Ahy Ahy2g1905 Chr2 92854590 92856230 -
Aip Aip02g02460 Chr02 98291401 98293253 -
Apr Apr10g0827 Chr10 20514487 20515815 -
Arst Arst2g02744 Chr2 84118370 84140853 -
Bva Bva02g00477 Chr02 6207857 6208207 -
Car Car06g02914 Chr06 47065648 47068557 -
Cca Cca01g01993 Chr01 46562266 46564610 -
Dod Dod07g1655 Chr07 44134151 44136292 -
Gma Gma01g01331 Chr01 46651579 46651947 -
Gso Gso1g1105 Chr1 44987554 44989712 -
Gso Gso3g0338 Chr3 5146636 5148408 +
Lal Lal14g0783 Chr14 9723551 9725597 -
Lal Lal19g0306 Chr19 3221699 3223284 +
Lan Lan1g0707 Chr1 15795842 15797083 -
Lapu Lapu10g01364 Chr10 20279450 20283219 +
Lasa Lasa7g00731 Chr7 50319421 50319777 +
Lja Lja3g3410 Chr3 67225693 67227513 -
Mal Mal7g0925 Chr7 25525324 25525896 +
Mepo Mepo2g00864 Chr2 11047168 11049557 +
Mesa Mesa13g04486 Chr13 70763762 70765188 -
Mtr Mtr4g0829 Chr4 10668463 10670794 +
Phco Phco1g01135 Chr1 13914000 13920937 +
Psa Psa7g5229 Chr7 457616391 457617560 -
Pste Pste6g00372 Chr6 1247274 1248835 +
Pumo Pumo7g01710 Chr7 45154017 45155705 -
Seca Seca2g01333 Chr2 22264521 22266304 +
Spst Spst4g00905 Chr4 38214710 38215946 -
Ssu Ssu4g2478 Chr4 62245560 62246582 -
Trre Trre7g00837 Chr7 5609294 5610319 +
Tsu Tsu06g00767 Chr06 6837288 6838253 +
Vian Vian9g00920 Chr9 17065326 17065764 +
Vifa Vifa2g05009 Chr2 1486896185 1486896692 -
Vimu Vimu9g00922 Chr9 15181628 15182170 -
Viun Viun10g01408 Chr10 28143079 28143906 -
Vivi Vivi5g00939 Chr5 20642266 20643079 +
Pvu Pvu10g0693 Chr10 15792965 15795651 +
Aev Aev02g1939 Chr02 21229438 21231531 +
Ahy Ahy12g2194 Chr12 108012637 108014892 +
Apr Apr10g0830 Chr10 20544309 20546822 +
Car Car06g02915 Chr06 47115453 47117345 +
Cca Cca01g01995 Chr01 46624022 46628284 +
Gso Gso3g0333 Chr3 5099424 5102439 -
Lan Lan12g0189 Chr12 3067499 3071198 -
Mal Mal7g0922 Chr7 25483501 25485529 -
Mtr Mtr4g0828 Chr4 10652616 10654641 -
Psa Psa7g5269 Chr7 459885195 459891990 +
Pumo Pumo7g01712 Chr7 45170671 45196917 +
Ssu Ssu4g2479 Chr4 62279069 62282509 -
Tpr Tpr4g1051 Chr4 10188002 10190084 -
Tsu Tsu06g00766 Chr06 6831628 6833473 -
Pvu Pvu10g0694 Chr10 16121648 16123876 +
Apr Apr10g0831 Chr10 20565086 20567258 +
Bva Bva02g00478 Chr02 6216052 6218378 +
Cca Cca01g01996 Chr01 46721648 46723667 +
Gso Gso3g0329 Chr3 4975793 4978204 -
Lal Lal14g0785 Chr14 9770536 9773543 +
Lja Lja3g3411 Chr3 67298169 67300291 +
Pvu Pvu10g0695 Chr10 16256754 16259465 +
Aev Aev02g1941 Chr02 21248918 21250868 +
Ahy Ahy12g2195 Chr12 108016751 108019131 +
Apr Apr10g0832 Chr10 20579147 20581836 +
Car Car06g02917 Chr06 47169226 47172241 +
Cca Cca01g01997 Chr01 46760040 46761855 +
Gma Gma01g01337 Chr01 46757310 46759168 +
Gso Gso1g1107 Chr1 45089955 45092048 +
Gso Gso3g0328 Chr3 4965430 4968105 -
Mtr Mtr4g0826 Chr4 10635801 10638074 -
Psa Psa7g5270 Chr7 459910258 459921487 +
Ssu Ssu4g2480 Chr4 62331487 62333551 +
Pvu Pvu10g0696 Chr10 16420504 16422010 +
Apr Apr10g0833 Chr10 20594240 20595966 +
Bva Bva02g00480 Chr02 6235064 6237453 +
Gso Gso3g0327 Chr3 4955132 4957524 -
Ssu Ssu4g2481 Chr4 62391701 62393764 +
Tsu Tsu06g00762 Chr06 6798237 6804084 -
Pvu Pvu10g0697 Chr10 16441758 16442480 +
Adu Adu02g02115 Chr02 84726985 84732759 +
Aed Aed2g1002 Chr2 7911589 7912876 -
Aev Aev02g1944 Chr02 21258963 21261553 +
Ahy Ahy12g2196 Chr12 108040536 108043219 +
Aip Aip02g02462 Chr02 98325606 98350301 +
Apr Apr10g0834 Chr10 20601777 20603503 -
Bva Bva02g00482 Chr02 6243322 6245079 +
Cca Cca01g01999 Chr01 46777405 46781980 +
Dod Dod07g1661 Chr07 44266507 44267885 +
Gma Gma01g01340 Chr01 46817143 46819577 +
Gso Gso1g1108 Chr1 45153812 45156324 +
Gso Gso3g0325 Chr3 4930538 4937780 -
Mal Mal7g0920 Chr7 25394325 25396756 -
Mtr Mtr4g0825 Chr4 10629979 10632250 -
Phco Phco1g01121 Chr1 13592306 13593193 -
Pumo Pumo7g01720 Chr7 45487848 45491398 +
Ssu Ssu4g2483 Chr4 62457094 62462343 +
Tpr Tpr4g1047 Chr4 10126948 10129080 -
Vivi Vivi5g00929 Chr5 20211996 20213784 -
Pvu Pvu10g0698 Chr10 16463637 16464745 +
Vivi Vivi5g00939 Chr5 20642266 20643079 +