Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3408 ATGGCTAGCGTGAAGTTTGTGTGTGCTCTTGTGGTGTTGAGCATGGTGGTAGCACCCATGGCGGAGGCTGCTATCACGTGTGGAGCGATTGCGAGCGCCCTGATTCCTTGCACCGCGTACATTCAGGGCGGTGCTGGTCCATCTCCACCGTGCTGTGCCGGAGTGAGGAGGGTCAACTCCGCTGCAAGCTCCACCGCTGACCGCAGGGCCGCTTGCAACTGCTTGAAGTCCGCCGCTGGCTCTTTCCCTCGTTTCAATGCTGGTAATGCTGCTTCCCTCCCCGGTAAGTGCGGTGTCAACATCCCATACAAGATCAGCACCTCCACCAACTGCGCTAACATCAAGTGA 348 0.5833 MASVKFVCALVVLSMVVAPMAEAAITCGAIASALIPCTAYIQGGAGPSPPCCAGVRRVNSAASSTADRRAACNCLKSAAGSFPRFNAGNAASLPGKCGVNIPYKISTSTNCANIK* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3408 115 CDD nsLTP1 25 111 - -
Lja3g3408 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 25 113 IPR036312 -
Lja3g3408 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1-RELATED 3 112 - -
Lja3g3408 115 Gene3D - 24 115 IPR036312 -
Lja3g3408 115 PANTHER - 3 112 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 SMART aai_6 27 111 IPR016140 -
Lja3g3408 115 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Lja3g3408 115 Pfam Protease inhibitor/seed storage/LTP family 27 111 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3408 Lja-Chr3 67194496 67195399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3408 6 115 Acyl Lipid Metabolism Gene Families AT5G59310 52.727 2.09e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3408 - - mtr:MTR_4g428370 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3408 3 67194496 67195399 Lja3g3408 3 67194496 67195399 ECH
Lja1g3289 1 40815050 40816081 Lja3g3408 3 67194496 67195399 PCT