Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0679 Acco07g2117 . Adu02g02046 Aed2g1067 Aev02g1895 Ahy12g2109 Ahy2g1842 . Alju05g0076 . . Apr10g0781 Arst2g02662 Bach6g01766 Bisa06g0115 Bva02g00414 Car06g02464 . Dere11g0115 Dod07g1600 Enph10g0729 Glsi07g2105 . Gma01g01273 Gso1g1057 . . . . . . . Lapu10g01264 Lasa7g00359 Lele37g1372 Lele38g1248 Lele39g0050 Lele40g1191 Lja3g3367 Mal7g0269 Mepo2g00380 Mesa13g05112 Mibi04g2090 Mtr4g0364 . . Prci12g0099 . . . . . . Ssu4g2424 Sto1g2180 Tpr4g0676 Trre7g00365 Tsu06g00334 . . . . Vivi5g00479 .
Pvu10g0680 Acco07g2116 . Adu02g02045 Aed2g1066 Aev02g1894 Ahy12g2107 Ahy2g1840 Aip02g02361 Alju05g0077 . . Apr10g0780 Arst2g02661 Bach6g01764 Bisa06g0116 Bva02g00413 Car06g02465 . Dere11g0116 Dod07g1599 Enph10g0731 Glsi07g2104 . Gma01g01272 Gso1g1056 . . . . . Lan1g0681 . Lapu10g01262 Lasa7g00360 Lele37g1371 Lele38g1247 Lele39g0051 Lele40g1190 Lja3g3365 Mal7g0271 Mepo2g00382 Mesa13g05110 Mibi04g2089 Mtr4g0366 . . Prci12g0100 . Pste6g00588 . . . . Ssu4g2423 Sto1g2181 Tpr4g0677 Trre7g00366 Tsu06g00335 . . . . Vivi5g00482 .
Pvu10g0681 Acco07g2115 . Adu02g02044 Aed2g1065 Aev02g1893 Ahy12g2106 Ahy2g1839 Aip02g02360 Alju05g0078 . . Apr10g0779 Arst2g02660 Bach6g01762 Bisa06g0118 Bva02g00411 Car06g02466 . Dere11g0118 Dod07g1597 Enph10g0732 Glsi07g2101 . Gma01g01271 Gso1g1055 . . . . . Lan1g0683 . Lapu10g01261 Lasa7g00361 Lele37g1370 Lele38g1246 Lele39g0052 Lele40g1189 Lja3g3364 Mal7g0272 Mepo2g00383 Mesa13g05109 Mibi04g2088 Mtr4g0367 . . Prci12g0103 . Pste6g00594 . . . . Ssu4g2422 Sto1g2184 Tpr4g0678 Trre7g00367 Tsu06g00337 . . . . Vivi5g00483 .
Pvu10g0682 . . Adu02g02041 Aed2g1062 Aev02g1890 Ahy12g2105 Ahy2g1837 Aip02g02358 . . . Apr10g0778 Arst2g02658 Bach6g01760 . Bva02g00399 Car06g02467 . . Dod07g1594 . . . Gma01g01268 Gso1g1053 . . . . . Lan1g0684 . Lapu10g01260 Lasa7g00363 . . . . Lja3g3362 Mal7g0281 Mepo2g00388 Mesa13g05105 . Mtr4g0369 . . . . Pste6g00608 . . . . Ssu4g2419 . Tpr4g0680 Trre7g00369 Tsu06g00339 . . . . Vivi5g00485 .
Pvu10g0683 . . Adu02g02039 Aed2g1061 Aev02g1889 Ahy12g2104 Ahy2g1836 Aip02g02356 . . Amo02g2576 Apr10g0777 Arst2g02657 Bach6g01759 . Bva02g00398 Car06g02468 . Dere11g0120 . Enph10g0734 Glsi07g2098 . Gma01g01267 . . . . . . . . Lapu10g01259 Lasa7g00364 Lele37g1367 Lele38g1244 . Lele40g1187 Lja3g3361 Mal7g0282 Mepo2g00389 . Mibi04g2086 Mtr4g0370 . . Prci12g0107 Psa7g5669 Pste6g00612 . . . . Ssu4g2418 Sto1g2186 Tpr4g0681 Trre7g00372 Tsu06g00340 . . . . Vivi5g00486 .
Pvu10g0684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0679 Chr10 12809673 12810293 -
Acco Acco07g2117 Chr07 38981176 38981814 +
Adu Adu02g02046 Chr02 83418158 83419492 +
Aed Aed2g1067 Chr2 8617261 8617881 +
Aev Aev02g1895 Chr02 20805955 20806611 +
Ahy Ahy12g2109 Chr12 106112095 106113439 +
Ahy Ahy2g1842 Chr2 91632407 91633761 +
Alju Alju05g0076 Chr05 739368 740003 -
Apr Apr10g0781 Chr10 19487412 19488602 +
Arst Arst2g02662 Chr2 82866828 82868157 +
Bach Bach6g01766 Chr6 28210619 28211254 +
Bisa Bisa06g0115 Chr06 2242539 2243195 -
Bva Bva02g00414 Chr02 5791478 5792433 +
Car Car06g02464 Chr06 27601257 27602334 -
Dere Dere11g0115 Chr11 1782135 1782770 -
Dod Dod07g1600 Chr07 43334071 43335493 +
Enph Enph10g0729 Chr10 9919387 9920010 -
Glsi Glsi07g2105 Chr07 65390075 65390734 +
Gma Gma01g01273 Chr01 45134300 45135403 +
Gso Gso1g1057 Chr1 43484524 43485675 +
Lapu Lapu10g01264 Chr10 16755585 16756704 +
Lasa Lasa7g00359 Chr7 10567499 10568167 -
Lele Lele37g1372 Chr37 22562525 22563148 +
Lele Lele38g1248 Chr38 23326039 23326662 +
Lele Lele39g0050 Chr39 366654 367277 -
Lele Lele40g1191 Chr40 21826496 21827275 +
Lja Lja3g3367 Chr3 66403593 66404743 +
Mal Mal7g0269 Chr7 6141693 6142355 -
Mepo Mepo2g00380 Chr2 4089432 4090762 -
Mesa Mesa13g05112 Chr13 81620816 81621472 +
Mibi Mibi04g2090 Chr04 52447368 52447991 +
Mtr Mtr4g0364 Chr4 4346030 4347083 -
Prci Prci12g0099 Chr12 810396 811566 -
Ssu Ssu4g2424 Chr4 60564447 60565097 +
Sto Sto1g2180 Chr1 29972463 29973429 -
Tpr Tpr4g0676 Chr4 6244421 6245539 -
Trre Trre7g00365 Chr7 2353433 2354098 -
Tsu Tsu06g00334 Chr06 2781001 2781935 -
Vivi Vivi5g00479 Chr5 8066819 8067946 -
Pvu Pvu10g0680 Chr10 12903276 12905985 +
Acco Acco07g2116 Chr07 38967537 38968902 -
Adu Adu02g02045 Chr02 83372031 83373771 -
Aed Aed2g1066 Chr2 8608058 8610735 -
Aev Aev02g1894 Chr02 20795934 20798490 -
Ahy Ahy12g2107 Chr12 106066254 106068010 -
Ahy Ahy2g1840 Chr2 91593042 91594792 -
Aip Aip02g02361 Chr02 96531002 96532726 -
Alju Alju05g0077 Chr05 747550 749023 +
Apr Apr10g0780 Chr10 19477993 19481271 -
Arst Arst2g02661 Chr2 82820749 82822453 -
Bach Bach6g01764 Chr6 28197900 28201222 -
Bisa Bisa06g0116 Chr06 2260439 2264095 +
Bva Bva02g00413 Chr02 5782157 5785238 -
Car Car06g02465 Chr06 27642610 27646340 +
Dere Dere11g0116 Chr11 1791651 1794175 +
Dod Dod07g1599 Chr07 43302282 43306063 -
Enph Enph10g0731 Chr10 9928064 9928432 +
Glsi Glsi07g2104 Chr07 65377042 65382870 -
Gma Gma01g01272 Chr01 45114919 45121356 -
Gso Gso1g1056 Chr1 43465435 43471768 -
Lan Lan1g0681 Chr1 14060089 14065055 +
Lapu Lapu10g01262 Chr10 16680732 16684064 -
Lasa Lasa7g00360 Chr7 10594571 10597346 +
Lele Lele37g1371 Chr37 22558166 22559120 -
Lele Lele38g1247 Chr38 23320447 23321543 -
Lele Lele39g0051 Chr39 370480 371410 +
Lele Lele40g1190 Chr40 21821608 21822702 -
Lja Lja3g3365 Chr3 66387753 66391700 -
Mal Mal7g0271 Chr7 6153405 6156166 +
Mepo Mepo2g00382 Chr2 4105295 4108433 +
Mesa Mesa13g05110 Chr13 81605331 81608095 -
Mibi Mibi04g2089 Chr04 52440563 52442164 -
Mtr Mtr4g0366 Chr4 4358968 4361678 +
Prci Prci12g0100 Chr12 822662 824219 +
Pste Pste6g00588 Chr6 2212765 2215817 +
Ssu Ssu4g2423 Chr4 60532241 60535686 -
Sto Sto1g2181 Chr1 29978563 29979895 +
Tpr Tpr4g0677 Chr4 6252219 6255821 +
Trre Trre7g00366 Chr7 2359514 2362690 +
Tsu Tsu06g00335 Chr06 2790900 2793803 +
Vivi Vivi5g00482 Chr5 8106369 8109198 +
Pvu Pvu10g0681 Chr10 13071144 13074335 +
Acco Acco07g2115 Chr07 38963812 38965427 -
Adu Adu02g02044 Chr02 83357615 83360000 -
Aed Aed2g1065 Chr2 8600515 8603604 -
Aev Aev02g1893 Chr02 20785594 20788783 -
Ahy Ahy12g2106 Chr12 106050527 106052839 -
Ahy Ahy2g1839 Chr2 91578222 91580519 -
Aip Aip02g02360 Chr02 96516643 96519072 -
Alju Alju05g0078 Chr05 755130 756790 +
Apr Apr10g0779 Chr10 19468078 19471267 -
Arst Arst2g02660 Chr2 82806440 82808700 -
Bach Bach6g01762 Chr6 28177799 28180014 -
Bisa Bisa06g0118 Chr06 2294277 2298375 +
Bva Bva02g00411 Chr02 5773127 5775266 -
Car Car06g02466 Chr06 27656868 27660263 +
Dere Dere11g0118 Chr11 1830156 1832920 +
Dod Dod07g1597 Chr07 43285709 43289104 -
Enph Enph10g0732 Chr10 9939067 9942635 +
Glsi Glsi07g2101 Chr07 65337842 65340716 -
Gma Gma01g01271 Chr01 45096583 45100093 -
Gso Gso1g1055 Chr1 43446946 43450447 -
Lan Lan1g0683 Chr1 14140010 14144170 +
Lapu Lapu10g01261 Chr10 16666671 16670005 -
Lasa Lasa7g00361 Chr7 10613590 10614981 +
Lele Lele37g1370 Chr37 22554865 22556469 -
Lele Lele38g1246 Chr38 23316888 23319855 -
Lele Lele39g0052 Chr39 373030 374718 +
Lele Lele40g1189 Chr40 21818053 21820983 -
Lja Lja3g3364 Chr3 66381005 66383895 -
Mal Mal7g0272 Chr7 6194247 6197152 +
Mepo Mepo2g00383 Chr2 4115656 4118648 +
Mesa Mesa13g05109 Chr13 81584371 81586884 -
Mibi Mibi04g2088 Chr04 52434988 52437160 -
Mtr Mtr4g0367 Chr4 4374742 4377475 +
Prci Prci12g0103 Chr12 830114 835320 +
Pste Pste6g00594 Chr6 2227584 2238119 +
Ssu Ssu4g2422 Chr4 60438472 60507079 -
Sto Sto1g2184 Chr1 29986399 29989251 +
Tpr Tpr4g0678 Chr4 6262091 6265026 +
Trre Trre7g00367 Chr7 2370770 2373195 +
Tsu Tsu06g00337 Chr06 2806555 2809464 +
Vivi Vivi5g00483 Chr5 8155179 8156980 +
Pvu Pvu10g0682 Chr10 13610259 13615851 -
Adu Adu02g02041 Chr02 83323923 83328334 +
Aed Aed2g1062 Chr2 8578781 8584176 +
Aev Aev02g1890 Chr02 20773177 20777346 +
Ahy Ahy12g2105 Chr12 106027952 106032797 +
Ahy Ahy2g1837 Chr2 91547710 91552586 +
Aip Aip02g02358 Chr02 96493115 96498064 +
Apr Apr10g0778 Chr10 19449530 19453885 +
Arst Arst2g02658 Chr2 82772446 82777241 +
Bach Bach6g01760 Chr6 28160539 28163983 +
Bva Bva02g00399 Chr02 5662374 5665855 +
Car Car06g02467 Chr06 27662172 27668636 -
Dod Dod07g1594 Chr07 43268002 43273449 +
Gma Gma01g01268 Chr01 45034755 45040494 +
Gso Gso1g1053 Chr1 43385219 43392307 +
Lan Lan1g0684 Chr1 14201521 14206239 -
Lapu Lapu10g01260 Chr10 16647967 16654092 +
Lasa Lasa7g00363 Chr7 10628968 10632548 -
Lja Lja3g3362 Chr3 66342079 66346791 +
Mal Mal7g0281 Chr7 6298369 6304556 -
Mepo Mepo2g00388 Chr2 4175695 4182518 -
Mesa Mesa13g05105 Chr13 81531799 81536868 +
Mtr Mtr4g0369 Chr4 4408016 4413972 -
Pste Pste6g00608 Chr6 2277508 2284647 -
Ssu Ssu4g2419 Chr4 60416388 60422056 +
Tpr Tpr4g0680 Chr4 6271197 6275487 -
Trre Trre7g00369 Chr7 2382295 2386519 -
Tsu Tsu06g00339 Chr06 2816444 2821144 -
Vivi Vivi5g00485 Chr5 8177419 8181847 -
Pvu Pvu10g0683 Chr10 13636550 13641173 +
Adu Adu02g02039 Chr02 83306158 83310067 -
Aed Aed2g1061 Chr2 8565543 8569005 -
Aev Aev02g1889 Chr02 20767582 20771999 -
Ahy Ahy12g2104 Chr12 106008880 106013019 -
Ahy Ahy2g1836 Chr2 91536014 91540193 -
Aip Aip02g02356 Chr02 96475188 96478604 -
Amo Amo02g2576 Chr02 81737917 81740850 +
Apr Apr10g0777 Chr10 19429148 19433309 -
Arst Arst2g02657 Chr2 82754805 82758768 -
Bach Bach6g01759 Chr6 28154669 28158703 -
Bva Bva02g00398 Chr02 5659328 5661217 -
Car Car06g02468 Chr06 27709039 27715200 +
Dere Dere11g0120 Chr11 1846430 1850290 +
Enph Enph10g0734 Chr10 9952203 9955587 +
Glsi Glsi07g2098 Chr07 65309299 65312283 -
Gma Gma01g01267 Chr01 45012467 45018076 -
Lapu Lapu10g01259 Chr10 16619362 16629807 -
Lasa Lasa7g00364 Chr7 10643449 10646595 +
Lele Lele37g1367 Chr37 22545175 22549162 -
Lele Lele38g1244 Chr38 23310174 23313243 -
Lele Lele40g1187 Chr40 21811641 21814227 -
Lja Lja3g3361 Chr3 66337846 66341123 -
Mal Mal7g0282 Chr7 6312764 6317162 +
Mepo Mepo2g00389 Chr2 4195669 4202660 +
Mibi Mibi04g2086 Chr04 52428389 52431365 -
Mtr Mtr4g0370 Chr4 4416331 4420466 +
Prci Prci12g0107 Chr12 842155 844918 +
Psa Psa7g5669 Chr7 479542223 479543701 +
Pste Pste6g00612 Chr6 2297628 2300984 +
Ssu Ssu4g2418 Chr4 60377327 60377755 -
Sto Sto1g2186 Chr1 29993905 29997766 +
Tpr Tpr4g0681 Chr4 6277771 6281216 +
Trre Trre7g00372 Chr7 2395304 2398454 +
Tsu Tsu06g00340 Chr06 2822706 2830160 +
Vivi Vivi5g00486 Chr5 8202379 8204501 +
Pvu Pvu10g0684 Chr10 13720911 13721832 -
Pvu Pvu10g0685 Chr10 13866881 13867054 +
Pvu Pvu10g0686 Chr10 13867902 13868720 +
Pvu Pvu10g0687 Chr10 13875246 13875479 +
Pvu Pvu10g0688 Chr10 13875741 13877551 +