Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1103 ATGGCTAGCCTCAAGTTTGCATGCGTAGTTGCGGTGATATGCATGGTTGTGGTGATCACTGCACCCATGACAAATGCCATCACGTGCGGGGAAGTAGCCAGATCCCTATCTCCATGCATCAATTACCTTCGGAGCCGCCGCGGCGGATCACCGGAGGCGGAATGCTGCAGAGGAGTCACGAGCCTCAACCGCGCCGCCAGTAACACCGCCGACCGACGCACCGCGTGCAATTGCCTGAAATCCGTTGCCGCTTCTATTTCTGGTTTAAATGCCAACAACGCAGCTTCACTCCCCGGGAGATGTAGAGTCAGGGTGCCCTACAGGATCAGCACCTCCACCAACTGCAACAGGATCAGGTAA 360 0.5639 MASLKFACVVAVICMVVVITAPMTNAITCGEVARSLSPCINYLRSRRGGSPEAECCRGVTSLNRAASNTADRRTACNCLKSVAASISGLNANNAASLPGRCRVRVPYRISTSTNCNRIR* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1103 119 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 PRINTS Plant phospholipid transfer protein signature 71 86 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 PRINTS Plant phospholipid transfer protein signature 106 117 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 Pfam Protease inhibitor/seed storage/LTP family 29 115 IPR016140 -
Gso1g1103 119 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 118 IPR036312 -
Gso1g1103 119 PANTHER - 1 117 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 SMART aai_6 29 115 IPR016140 -
Gso1g1103 119 ProSitePatterns Plant lipid transfer proteins signature. 97 118 IPR000528 GO:0006869|GO:0008289
Gso1g1103 119 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 117 - -
Gso1g1103 119 CDD nsLTP1 27 116 - -
Gso1g1103 119 Gene3D - 26 119 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1103 Gso-Chr1 44937256 44941203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1103 6 119 Acyl Lipid Metabolism Gene Families AT5G59320 50.000 2.59e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1103 - - gmx:100775184 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1103 1 44937256 44941203 Gso3g0340 3 5170970 5172779 GST
Gso9g2295 9 47206488 47207777 Gso1g1103 1 44937256 44941203 PCT
Gso1g1103 1 44937256 44941203 Gso9g2295 9 47206488 47207777 PCT