Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00380 CTATATAAACCCTACTCGAGCAGACACTAGACGCACCAAGCAAGAAGCTCTTTAGTAAAAAGAAAATACTACATTGCTAGTTTCTGTTTGGTGTTTACTTTAGTGCAGTGATGGCTAGCGTGAAGGTTGCGTGCGTGGTAGCGGTGCTGTGCATGGTTGTAGTGAGTGCACATGCAATCACGTGCAACCAGGTTAGCAGCGCTGTAGCGCCGTGCTTCCCATACCTTCGATCGGGTGGAAAGCCGTCGGGGTTGTGCTGCCAAGGCGTGGCCAAACTTAACTCGCAGGCCAAGACCACCGCAGACCACAGGAACGCGTGCAATTGCCTCAAAACCTTGGCCAAAGGCGTTGGTTCTTCTTTGAATCCCAACAACGCAGCTTCACTCCCAGCCAAATGTAACGTCAACATTCCCTACAAGATCAGCCTCTCCACCAACTGCAACAGCATCCAGTTCTGAAGGATGAATCTGGTATAAGAAAAAAAGAGCAGGGCAAATTTTCAGTGGCAGGATGCTACATATGATAGTAATGAATTAACTACGGAAAAATAAAGGGAAGGCGATGAGGGCTCCACTTGTGCGAGTCTCCTCTTGGTGTCGGCATTTCCCTTAGTTGTTTAAGACTTTGGTCCAGTTATGTCATGGTGTTCTTAAATTTGTCTCAGTTGGTTGCTGAAGTAATAATGACTTATATAGTGCTTTAATTCCTTGCTACTACTCTACTTTTTGAAATTTTTTGCCGTTGTCTTATGACGTGTTTGGATTGTCCTTGTGGAGATCTTAAATGTTCGTTTGCATATTTTTAAAGCATAAAACAGAAAAGTGATTACACTTTTAACTGAACTGGAAACTAAATACACCCTTAAATGGTTCTTCTCACCTTAATTTGTGTTTGGCATTCCAAACACCTCGTTTTCCTCTG 921 0.4376 MASVKVACVVAVLCMVVVSAHAITCNQVSSAVAPCFPYLRSGGKPSGLCCQGVAKLNSQAKTTADHRNACNCLKTLAKGVGSSLNPNNAASLPAKCNVNIPYKISLSTNCNSIQF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00380 115 PRINTS Plant phospholipid transfer protein signature 101 112 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 PRINTS Plant phospholipid transfer protein signature 24 40 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 PRINTS Plant phospholipid transfer protein signature 83 100 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 PRINTS Plant phospholipid transfer protein signature 44 58 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 PRINTS Plant phospholipid transfer protein signature 65 80 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 Pfam Protease inhibitor/seed storage/LTP family 25 110 IPR016140 -
Pste6g00380 115 ProSitePatterns Plant lipid transfer proteins signature. 92 113 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 Gene3D - 22 115 IPR036312 -
Pste6g00380 115 SMART aai_6 25 110 IPR016140 -
Pste6g00380 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 23 113 IPR036312 -
Pste6g00380 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 111 IPR000528 GO:0006869|GO:0008289
Pste6g00380 115 CDD nsLTP1 23 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00380 Pste-Chr6 1263410 1265967 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00380 8 114 Acyl Lipid Metabolism Gene Families AT5G59320 49.533 1.36e-29 101