LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01407	ATGGCGAGCATGAAGGTTGGATGCATCGTTGCGATGGTGTTCATGGTCGTCGTGAGTGCACCCATAGCACATGGGATCACGTGCTCGCAAGTTGCCATTTCTGTGTCTCCATGCGTCGCCTACAACCAAATAGGCGGAGCCCCGTCGCCGGCATGTTGCCGCGGATTGAAGAACCTGAACGCCGCCGCGAAGAACACTGCTGACCGCCGGACCGCGTGCAACTGCCTGAAATCCTTTTTCGGTAGCTTCCCCAGTATCAACCTCGACCTCGCCGCTTCACTCCCAAGCAAATGTAGCGTCAGCAGCATACCCTACAATATCAGCACCTCCACCAACTGTGCTACCATCAAGTTCTGA	357	0.5574	MASMKVGCIVAMVFMVVVSAPIAHGITCSQVAISVSPCVAYNQIGGAPSPACCRGLKNLNAAAKNTADRRTACNCLKSFFGSFPSINLDLAASLPSKCSVSSIPYNISTSTNCATIKF	118

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01407	118	Gene3D	-	25	118	IPR036312	-
	Viun10g01407	118	CDD	nsLTP1	26	113	-	-
	Viun10g01407	118	SUPERFAMILY	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	26	116	IPR036312	-
	Viun10g01407	118	PANTHER	NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED	6	114	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	ProSitePatterns	Plant lipid transfer proteins signature.	94	116	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	PRINTS	Plant phospholipid transfer protein signature	68	83	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	PRINTS	Plant phospholipid transfer protein signature	47	61	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	PRINTS	Plant phospholipid transfer protein signature	27	43	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	PRINTS	Plant phospholipid transfer protein signature	104	115	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	PRINTS	Plant phospholipid transfer protein signature	85	102	IPR000528	GO:0006869\|GO:0008289
	Viun10g01407	118	SMART	aai_6	28	113	IPR016140	-
	Viun10g01407	118	Pfam	Protease inhibitor/seed storage/LTP family	28	104	IPR016140	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01407	Viun-Chr10	28137347	28138157	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g01407	8	117	Acyl Lipid Metabolism Gene Families	AT5G59310	51.818	1.76e-27	95.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01407	-		-	gmx:100306510	130.954