Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2478 ATGAAGACCGCAACCCTCAACACTAGAACTCACGAACTAGCAACCAGTCTCCAAAACCTTCTGCACAATCACTTCCCTTTGAGAATGGCTAGCTTTAAGTTGGCGTGCGCGGTTCTGGTGTGCATGGCCGCGGTGGGTGCACACACTGCCCAAGCCATCACGTGCGGGCAAGTTGAGGGCAACCTTGCACCGTGCATAGGGTTCCTCCAGCATGGTGGGCCAGCTCCCGCCGGATGCTGCAACGGCGTCAAGAGTATCTTGAACGCGGCGAGGACCACCGCGGACCGCCGCGCCATTTGCAACTGCTTGAAGACGGCTGCTGGTGCAGTCCGCGGACTGAATCCTTCCAACGCTCAGGCTCTCCCTGGCAAATGTGGGGTCAACATCCCCTACAAGATCAGCACCTCCACCAACTGTGCTAGGGATTTCGATTTGATGTTGTCGTCATTTTTGTGCATTCATGCAGTCCGCAAATCTGAATTGATGGATGAAGATTGA 498 0.5522 MKTATLNTRTHELATSLQNLLHNHFPLRMASFKLACAVLVCMAAVGAHTAQAITCGQVEGNLAPCIGFLQHGGPAPAGCCNGVKSILNAARTTADRRAICNCLKTAAGAVRGLNPSNAQALPGKCGVNIPYKISTSTNCARDFDLMLSSFLCIHAVRKSELMDED 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2478 165 PANTHER - 29 141 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 PRINTS Plant phospholipid transfer protein signature 112 129 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 PRINTS Plant phospholipid transfer protein signature 54 70 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 PRINTS Plant phospholipid transfer protein signature 74 88 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 PRINTS Plant phospholipid transfer protein signature 95 110 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 PRINTS Plant phospholipid transfer protein signature 130 141 IPR000528 GO:0006869|GO:0008289
Ssu4g2478 165 Pfam Protease inhibitor/seed storage/LTP family 55 139 IPR016140 -
Ssu4g2478 165 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 53 140 IPR036312 -
Ssu4g2478 165 SMART aai_6 55 139 IPR016140 -
Ssu4g2478 165 CDD nsLTP1 53 139 - -
Ssu4g2478 165 Gene3D - 52 141 IPR036312 -
Ssu4g2478 165 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 29 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2478 Ssu-Chr4 62245560 62246582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2478 32 139 Acyl Lipid Metabolism Gene Families AT2G38530 56.364 1.19e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2478 - - gmx:100776812 169.474