Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01408 ATGGCCAGTGTTAAGTTTGCATGCGTGGTGGTGATGTTGATGGTGGTGGTGGGTGCACACAGTGCGGAGGGAATGACGTGTGGGCAAGTTCAGGGTAACCTAGCACAGTGCATAGGGTTCCTTCAAAATGGTGGGATTGTTCCGCCAGCATGCTGCAACGGGGTGAAGAATATCCTTAACAGTGCCAGAACCACCGCCGATCGCCGCGGCATTTGTAGCTGCCTGAAGTCTGCTGCTGGGGCCGTTCGTGGTCTCAATCCCAGTAATGCTCAGGCTCTCCCTGGGAAGTGTGGGGTCAACATACCCTGGAAGATCAGCAGCTCCACCAACTGTAACACCATCAATTGA 348 0.5431 MASVKFACVVVMLMVVVGAHSAEGMTCGQVQGNLAQCIGFLQNGGIVPPACCNGVKNILNSARTTADRRGICSCLKSAAGAVRGLNPSNAQALPGKCGVNIPWKISSSTNCNTIN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01408 115 CDD nsLTP1 26 112 - -
Viun10g01408 115 FunFam Non-specific lipid-transfer protein 24 115 - -
Viun10g01408 115 Pfam Protease inhibitor/seed storage/LTP family 27 103 IPR016140 -
Viun10g01408 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
Viun10g01408 115 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 112 IPR000528 GO:0006869|GO:0008289
Viun10g01408 115 SMART aai_6 27 111 IPR016140 -
Viun10g01408 115 Gene3D - 24 115 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01408 Viun-Chr10 28143079 28143906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01408 6 115 Acyl Lipid Metabolism Gene Families AT5G59320 50.000 2.56e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01408 - - gmx:100776812 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01208 5 8610453 8611180 Viun10g01408 10 28143079 28143906 PCT