Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0340 ATGATGACTAGCTTTAAGGTTGCATGTGTGATTGCGATGATGTGCATGGTTGTGGCCATGAGTGTTACACCCATGGCACAGGCCGCAATCACGTGCGGGCAGGTCGCCGGCGACGTGTCACCGTGCCTCAGTTATCTTCGAAGCGGCGGAAAACCGTCAGACGCCTGCTGCAACGGAGTGAAGTCGCTCAGCGGCGCGGCGAAGACCACCGCCGACCGCCAGGCAGCGTGCAATTGCCTGAAAAACCTTGCCAATAATATGGGACAGAGTTTGAATGCCGGCAACGCAGCCTCTCTCCCTGGCAAATGTGGCGTCAACATCCCTTACAAGATCAGCACCTCCACCAACTGCGCCACCATCAAGTTCTGA 369 0.5664 MMTSFKVACVIAMMCMVVAMSVTPMAQAAITCGQVAGDVSPCLSYLRSGGKPSDACCNGVKSLSGAAKTTADRQAACNCLKNLANNMGQSLNAGNAASLPGKCGVNIPYKISTSTNCATIKF* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0340 122 Pfam Protease inhibitor/seed storage/LTP family 32 117 IPR016140 -
Gso3g0340 122 Gene3D - 29 122 IPR036312 -
Gso3g0340 122 ProSitePatterns Plant lipid transfer proteins signature. 99 120 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 SMART aai_6 32 117 IPR016140 -
Gso3g0340 122 PANTHER - 2 119 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2 119 - -
Gso3g0340 122 CDD nsLTP1 30 117 - -
Gso3g0340 122 PRINTS Plant phospholipid transfer protein signature 31 47 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 PRINTS Plant phospholipid transfer protein signature 72 87 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 PRINTS Plant phospholipid transfer protein signature 90 107 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 PRINTS Plant phospholipid transfer protein signature 108 119 IPR000528 GO:0006869|GO:0008289
Gso3g0340 122 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 119 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0340 Gso-Chr3 5170970 5172779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0340 1 121 Acyl Lipid Metabolism Gene Families AT2G38540 50.413 2.55e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0340 - - gmx:100817318 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1103 1 44937256 44941203 Gso3g0340 3 5170970 5172779 GST
Gso9g2295 9 47206488 47207777 Gso3g0340 3 5170970 5172779 PCT
Gso3g0340 3 5170970 5172779 Gso9g2295 9 47206488 47207777 PCT