Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3410 ATGGCTAACCCCAAGTTGGCATGCATGGTTCTTGTGTGCATGGCTTTGGTGGCATGCACACCGCACGCCGTACATGCCATCACGTGCGGGCAAATCGCGAGCAGTCTCATACCCTGCGTGAGCTATCTCCAGCGCGGCGGCCCTGTTCCTCCGCGATGCTGCAACGGAATTAGGAGCATTGCGAATGCGGCGAGGACCACCGTGGACCGCCGCACCGCTTGCAACTGCTTGAAGTCTGCTGCTGCTAGAGTCCAAGGAATCAACCTTAGAAATGCTGAGTCTCTCCCCGGCAAATGCAACGTTCGCATTCCCTATAAGATCAGTACCTCCATCGACTGTGCCAGAATCAGTTAA 354 0.5593 MANPKLACMVLVCMALVACTPHAVHAITCGQIASSLIPCVSYLQRGGPVPPRCCNGIRSIANAARTTVDRRTACNCLKSAAARVQGINLRNAESLPGKCNVRIPYKISTSIDCARIS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3410 117 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lja3g3410 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2 115 - -
Lja3g3410 117 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 115 IPR036312 -
Lja3g3410 117 CDD nsLTP1 27 113 - -
Lja3g3410 117 Gene3D - 26 117 IPR036312 -
Lja3g3410 117 PANTHER - 2 115 IPR000528 GO:0006869|GO:0008289
Lja3g3410 117 SMART aai_6 29 113 IPR016140 -
Lja3g3410 117 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3410 Lja-Chr3 67225693 67227513 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3410 6 116 Acyl Lipid Metabolism Gene Families AT5G59320 45.536 1.06e-30 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3410 - - csin:114259269 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3410 3 67225693 67227513 Lja3g3410 3 67225693 67227513 ECH